| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0148 |
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| Symbol | atpD |
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| ID | 8709612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 169246 |
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| End bp | 170733 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646482267 |
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| Product | ATP synthase F1, beta subunit |
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| Protein accession | YP_003373412 |
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| Protein GI | 283782658 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0055] F0F1-type ATP synthase, beta subunit |
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| TIGRFAM ID | [TIGR01039] ATP synthase, F1 beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.419703 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAAA ATCAGACCAC AGCGCCTCCA GAAGCTGAGC AGGAGGTCGA TCCAACAGCT
GGTCGCGTAA CCCGCGTTCA GGGTTCCGTG ATTGACGTTG AATTCCCGGT CGGCTATCTG
CCGGATATTT ACAATGCTCT CAAAGTCGAT ATCAACACCG TTGGAAACAC CGAGGGAGAT
ACCGTCCACG AGATTACGCT GGAAGTTGAG CAGCACCTTG GTGATTCGAC TGTGCGTGCA
GTTGCTTTAA AGCCTACTGA CGGTTTGGTT CGTGGTGCTT TAGTGCGAGA TACTGGCGGC
CCAATCTCTG TACCTGTTGG TGATGTTACT AAGGGTCACG TGTTCGATGT TACAGGCAAC
ATTTTGAATG CTAAGCCTGG CGAGCACATT GAAATAACTG AGCGTTGGCC AATTCACCGT
AACCCACCTG CTTTTGATCA GCTTGAGTCT AAGACTCAGA TGTTCGAAAC TGGTATTAAG
GTTATCGATT TGCTTACCCC TTACGTTCAG GGCGGTAAAA TTGGTCTGTT CGGTGGTGCA
GGCGTTGGTA AAACTGTGTT GATTCAGGAA ATGATTCAGC GCGTTGCACA GAATCACGGT
GGTGTGTCTG TGTTTGCTGG CGTTGGCGAA CGTACCCGTG AAGGTAACGA TTTGATTGGC
GAAATGGCTG ATGCTGGCGT TTTGGAGAAA ACAGCGCTTG TCTTTGGTCA GATGGATGAG
CCTCCTGGGA CTCGTCTTCG CGTGCCTCTT ACCGCTTTGA CTATGGCTGA GTACTTCCGC
GATGTGCAGA ATCAGGATGT GTTGCTGTTC ATCGATAACA TATTCCGCTT TACTCAGGCT
GGTTCTGAGG TTTCCACGCT GCTTGGTCGT ATGCCTTCCG CAGTTGGTTA CCAGCCAAAC
TTGGCAGATG AAATGGGTGC ATTACAGGAG CGTATTACTT CTACGCGCGG CCATTCCATT
ACGTCACTTC AGGCTATTTA CGTTCCTGCA GATGATTACA CTGATCCTGC ACCTGCAACA
ACCTTTACGC ACTTGGATGC AACTACTGAG CTTTCGCGTG ATATTGCAGC TAAGGGTATT
TACCCAGCTG TGGATCCTTT GACTTCTACT TCTAGAATTT TGGATCCGCG TTACGTTGGT
CAGGCTCATT ATGATTGCGC GAACCGCGTT AAGGCTATTT TGCAGCGTAA CAAGGAGCTT
CAGGACATCA TCGCTTTGAT TGGTATCGAT GAGCTTGGTG AGGAAGATAA GACTACTGTC
AGCCGCGCTC GTAAGATTGA GCAGTTCCTT GGTCAGAACT TCTATGTGGC TGAAAAGTTC
ACTGGTCGTC CAGGTTCTTA TGTGCCAGCA GACGAAACCA TTGAGGCATT CACTCGCATT
TGCGATGGTG TTTACGATGA GATTCCTGAG CAGGCATTCT CTGGTATCGG TGGCATTGAT
GATCTTGAGC GTCGTTGGCA CGATATGCAG CAAGAGTTTG GTGCGTGA
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| Protein sequence | MAENQTTAPP EAEQEVDPTA GRVTRVQGSV IDVEFPVGYL PDIYNALKVD INTVGNTEGD
TVHEITLEVE QHLGDSTVRA VALKPTDGLV RGALVRDTGG PISVPVGDVT KGHVFDVTGN
ILNAKPGEHI EITERWPIHR NPPAFDQLES KTQMFETGIK VIDLLTPYVQ GGKIGLFGGA
GVGKTVLIQE MIQRVAQNHG GVSVFAGVGE RTREGNDLIG EMADAGVLEK TALVFGQMDE
PPGTRLRVPL TALTMAEYFR DVQNQDVLLF IDNIFRFTQA GSEVSTLLGR MPSAVGYQPN
LADEMGALQE RITSTRGHSI TSLQAIYVPA DDYTDPAPAT TFTHLDATTE LSRDIAAKGI
YPAVDPLTST SRILDPRYVG QAHYDCANRV KAILQRNKEL QDIIALIGID ELGEEDKTTV
SRARKIEQFL GQNFYVAEKF TGRPGSYVPA DETIEAFTRI CDGVYDEIPE QAFSGIGGID
DLERRWHDMQ QEFGA
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