Gene HMPREF0424_0136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0136 
Symbol 
ID8708955 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp157529 
End bp158518 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content41% 
IMG OID646482255 
Productpeptidyl-prolyl cis-trans isomerase, FKBP-type 
Protein accessionYP_003373401 
Protein GI283782647 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0545] FKBP-type peptidyl-prolyl cis-trans isomerases 1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAA TCAAAACATT AGAACAAAAA TCCTTTTTGC TTCGCACTTT TGCAACTATT 
AGTGCAGTGG CAATGTGTGT AGTACTCGCT TCATGCGGAG AAAGTTCCAA CAACAAAAAC 
AATTTAACTG ATGAGAACGC TCAAAAAGCT GGAATGCAGT TGCTGGAAGG CGTAAGCGCA 
TCTGGAGCAC TTGGGAAAAA GCCTAAAATA ACGCTGAAAA CGCCTGTAAA AGTAAAGCAA 
AATACTTATG CTGTTTTGCA ACGAGGCAAC GGAGAAACAA TTAAAGAAGG CGATCGCGTA 
TGCTCTCAGG GCATTGTGTT CGACTCCAAA ACCGGCAAAG AGCTTATGAA TACTTGGGAA 
AAAGGCAAAG TTGATTGCTC GATTTACATT AATAAAAATT CTACAAGCCG CCCATATTAC 
GCTTTGATTA AAGGCAAGAA AATTAATACA ACTATTGCTT TTGGCGTAAG TGAAGGATAT 
AAAAATCCTT CATATGTTAT GGTTCTTACA ATGGTTTCGC GATCAAAGGC TATAACTAGA 
GCAACGGGCA AGGCTGTTAC GAATATTCCC GCAAATTTGC CGAAGGTAAC TCTTGATAAA 
TCTGGAGCAC CAACCTTAGA TAAAAATAAC TACGTTCCAG ACGGAAAGCT TGTTTCTCAG 
ACTTTGATTG AAGGAACCGG CAAAAAAGTA ACTGCAAAAG ACACAGTTTC TGCCCATTAC 
ACTGGCTGGA CTACTGATAA AGACGGCAAA TTGCATCAAT TTGATTCTTC TTGGCTTCGT 
GGCATACCTG CAGACTTCCA ACTTGCTGGA GGAGTAATCC CTGGTTGGAC TAAAGGCTTA 
ACTGGAAAGA AAGTTGGCTC CCAAGTTCTT TTGGTAATCC CACCAGAAGA TGGCTACGGT 
AAAGAAGAAA AGAAGGACGC GCGCGGAAAC GTAACTATTC CTGCAAATGC CACGCTGTAC 
TTTGTAGTCG ATATTCTCTA TGCTTCGTGA
 
Protein sequence
MKKIKTLEQK SFLLRTFATI SAVAMCVVLA SCGESSNNKN NLTDENAQKA GMQLLEGVSA 
SGALGKKPKI TLKTPVKVKQ NTYAVLQRGN GETIKEGDRV CSQGIVFDSK TGKELMNTWE 
KGKVDCSIYI NKNSTSRPYY ALIKGKKINT TIAFGVSEGY KNPSYVMVLT MVSRSKAITR 
ATGKAVTNIP ANLPKVTLDK SGAPTLDKNN YVPDGKLVSQ TLIEGTGKKV TAKDTVSAHY 
TGWTTDKDGK LHQFDSSWLR GIPADFQLAG GVIPGWTKGL TGKKVGSQVL LVIPPEDGYG 
KEEKKDARGN VTIPANATLY FVVDILYAS