Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0133 |
Symbol | |
ID | 8709090 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 152276 |
End bp | 155029 |
Gene Length | 2754 bp |
Protein Length | 917 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 646482252 |
Product | efflux ABC transporter, permease protein |
Protein accession | YP_003373398 |
Protein GI | 283782644 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGAAAG TAGCAGCAGT TTCAAAGCAA TCTGATAATA AAAATGCCAA TAATGGTGGT GAAGTTAAGC GCATGCATTC GTTGCTGCCA ATAGTATTTA TTAGCGCAAT TAGAATGTGG GTTCGCGAAT GGCGCCGCTT TTGCGTTCTT GCGGTTATTG CAATGCTTGG CGTTGCTGTT ATGACTGGTA TTTATGCAGG ATGCAACGAC ATGTTTCTCG CTACTAACGA TATGTATGCG AAATTGCATG CTTATGATTT GCAAATCGTA TCTACTCTTG GTTTAACTAA AGACGATGTT GCAGCATTAC GCGCGTTGCC AAGTGTGAGT GAAGTTGAAG CAGAGCGTTC TTGGAAAGCA ACAGCGCACG CAACAGATGA TGCAAAGTCT TCATACGCAA TGAATTTCGT GCATTATGTA GAATCACAAA AAAATCTTAA TCGCTTGCAT TTGCTTAAGG GCAACATGCC TAAAAATAAT AGTGAAGCTG TTGTAACTCA GCGATTTTTA CACGATAGTG GATTGAGCAT TGGCAATGTG ATAGTAGTCA ACGTGCAGCA AAATGCGGGC GTTGGAAGTC TTGGTTCTTC TAATTCAAAG TCTAAAACTT ATCGTTTGCG CATAACTGGT AGCGTGCTAG ATAGCAACGA TTTAAACAAT CCTGATGGCT ATCAATCTAA AGCATTTCGT AACTCTGTGA CGTCTAGATA CCCAATATTT ACTTCTGCTG CTCCTGATAA CGTGGCTAGC TTGCCGTATA CAGCAATATC GGTGCGTTTG AATGATGCTC AACGTGTCAA TGTTTTTTCT AAAGATTATC GTGGCATCGT CGACGATGCG TCTGAACAGA TTCAAGAACG CGTGCAATCT AAGCGAGAAA CAGCTCGACG TAATCAAATT ATCGACAAAC AAGTTAATTT AGAATTAAAA AATATTATTG CAAACGATCC CAGGCTTCAG CGCGCTCCAA ATTTTGTTAA AGAGCAAGCA AAAAAGCAAA TTCGTAAACA AATTAAGTCA GAGATTCAAA AACGTGTTCC TCAAGCTCAA TGGCATATAT CTACTCGTAT AGCTAACGAT AGTTATGCTA GTTTGCGTTC TGACGTTGCT TCAATACAGT CACTTGGATA CGCTTTCCCG GCAGTATTTC TTGTTGTAGC AATGATGATG AGTTTAACTG CTATGGCTCG TATGGTTGAA GAAGAGCGAG GGCTTATTGG CACATACTTA AGTTTGGGAT ACGGTCGTTC TACTGCAGTA ACAAGACATG CTTTCTTCGC AATATTTGCG TGCTTTGTTG GCGGCGGAAT TGGCGATATT ATGGGTTTTC TTGCAATCCC TTCACTTTTA CTAAAAATCT TGCGTGGTTT ATACGCCGTT CCAGACGTTA GGTTGAAGTA TGACTGGCTA TATGGCTCTT TGTGTGTGCT AGCATTTGTG ATTCCTGTTG CAATATGCAC AATCGTTGTT AGTTGGCGAG AAACAAAGCA AGTTCCTGCA GCTTTGTTAA GACCAAAAGC TCCAAAAGCT GGTTCTCGCG TTCTTCTTGA AAGGTTGCCT TGGATTTGGA AGCGAATGAG TTTCTTAAAT AAGGTTACTG TTCGCAATTT GGCGCGATTC AAAGGCAGAT TGTGCATGAC TATCGGTGGA GTTGCCGGTT GCACAGCGCT TATTGTTTGC GGTCTTGCTT TGAACGATAC TGTTGCGACC TTGGGTATTC GCCAATACGA GGGAATTTAT CGATACGATA TGATTTCTAT CTCGGCTCCA GGATCTTTCC AAAATATGAA GAAAAGCGTT GAGCGAGACA AGTCAAATAA TAAAGTAGAA ACTATACTTC CAGCTTATGT GGGCTCTGGA GAAATAGCTA AAAATCAATC AAATAAGTCG CATAGTCGTC ATGTTGAGGA TGCTGAAAGC GTGCAGTTGA TTGTTGTAAA AGACACAAAA GCTTTGTCTT ATCTTGTAAA TTTGCAGGAT GTGGGCAATA ATTTGCAAGC TATTAAACTT ACGGATGAAG GTCCGTTGCT TTCTCAAAGT GCTGCTGCAT CTCTGGACAT TACTCGTGGT AGTGAAATTA ATGTGACGAA TACTAGTTTT AAACGTGCGA AAGTTAAAGT TAAAGCTATT GTTCGTAATC TTATTGGTTC TAATATTTAC ATGACTGAAC GTTGCTACGA ACGCTTATTT AATGGAGAAA ACAGTAAGCT TTTGAAACAT AATGCGTTAA TTTTGCGTTT GCGAGGTAGC GATAATAATA AAATTAAATA TGCCGACAAG GTTTCTGAAC GTGACGGTGT GCTTGCTGTT ATGAATATTA CGCGTATGAA GCATGCTTTT AGTTTTGATC TTATGAATGC TGTTGTTGCT TTAATCGTAA CTTTGGCTGC TGGCTTAGCT TTAGCTGTGC TTTTTACTCT TGCAAGTACT AATATTTCGG AACGTACTCG CGAAATGGCT ACGCTAAAAG TTCTTGGTTT TTATCGTAGA GAAGTTCATT CCTATGTGCA TAAAGAAATG CTTACTTTAA CTGTTATCGG CATTGCAGTT GGATTGCCAT TAGGAAGGCT TATTGCAGGA TTGTTGACTA GCGCGCTTCG TATGCCGTCT TTGTATTTTG AAGTTGAAGT AGCTCCTTTA AGCTATTGCA TTGCTGGCGT TGCAACACTA ATTTTTGCGT TAATTGTGCA ATGGGCTACC AACCCAGCTT TGGATCGCAT AGATCCAGTA AGCTCACTTA AAAGTGTGGA ATAG
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Protein sequence | MRKVAAVSKQ SDNKNANNGG EVKRMHSLLP IVFISAIRMW VREWRRFCVL AVIAMLGVAV MTGIYAGCND MFLATNDMYA KLHAYDLQIV STLGLTKDDV AALRALPSVS EVEAERSWKA TAHATDDAKS SYAMNFVHYV ESQKNLNRLH LLKGNMPKNN SEAVVTQRFL HDSGLSIGNV IVVNVQQNAG VGSLGSSNSK SKTYRLRITG SVLDSNDLNN PDGYQSKAFR NSVTSRYPIF TSAAPDNVAS LPYTAISVRL NDAQRVNVFS KDYRGIVDDA SEQIQERVQS KRETARRNQI IDKQVNLELK NIIANDPRLQ RAPNFVKEQA KKQIRKQIKS EIQKRVPQAQ WHISTRIAND SYASLRSDVA SIQSLGYAFP AVFLVVAMMM SLTAMARMVE EERGLIGTYL SLGYGRSTAV TRHAFFAIFA CFVGGGIGDI MGFLAIPSLL LKILRGLYAV PDVRLKYDWL YGSLCVLAFV IPVAICTIVV SWRETKQVPA ALLRPKAPKA GSRVLLERLP WIWKRMSFLN KVTVRNLARF KGRLCMTIGG VAGCTALIVC GLALNDTVAT LGIRQYEGIY RYDMISISAP GSFQNMKKSV ERDKSNNKVE TILPAYVGSG EIAKNQSNKS HSRHVEDAES VQLIVVKDTK ALSYLVNLQD VGNNLQAIKL TDEGPLLSQS AAASLDITRG SEINVTNTSF KRAKVKVKAI VRNLIGSNIY MTERCYERLF NGENSKLLKH NALILRLRGS DNNKIKYADK VSERDGVLAV MNITRMKHAF SFDLMNAVVA LIVTLAAGLA LAVLFTLAST NISERTREMA TLKVLGFYRR EVHSYVHKEM LTLTVIGIAV GLPLGRLIAG LLTSALRMPS LYFEVEVAPL SYCIAGVATL IFALIVQWAT NPALDRIDPV SSLKSVE
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