Gene HMPREF0424_0133 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0133 
Symbol 
ID8709090 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp152276 
End bp155029 
Gene Length2754 bp 
Protein Length917 aa 
Translation table11 
GC content40% 
IMG OID646482252 
Productefflux ABC transporter, permease protein 
Protein accessionYP_003373398 
Protein GI283782644 
COG category[V] Defense mechanisms 
COG ID[COG0577] ABC-type antimicrobial peptide transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGAAAG TAGCAGCAGT TTCAAAGCAA TCTGATAATA AAAATGCCAA TAATGGTGGT 
GAAGTTAAGC GCATGCATTC GTTGCTGCCA ATAGTATTTA TTAGCGCAAT TAGAATGTGG
GTTCGCGAAT GGCGCCGCTT TTGCGTTCTT GCGGTTATTG CAATGCTTGG CGTTGCTGTT
ATGACTGGTA TTTATGCAGG ATGCAACGAC ATGTTTCTCG CTACTAACGA TATGTATGCG
AAATTGCATG CTTATGATTT GCAAATCGTA TCTACTCTTG GTTTAACTAA AGACGATGTT
GCAGCATTAC GCGCGTTGCC AAGTGTGAGT GAAGTTGAAG CAGAGCGTTC TTGGAAAGCA
ACAGCGCACG CAACAGATGA TGCAAAGTCT TCATACGCAA TGAATTTCGT GCATTATGTA
GAATCACAAA AAAATCTTAA TCGCTTGCAT TTGCTTAAGG GCAACATGCC TAAAAATAAT
AGTGAAGCTG TTGTAACTCA GCGATTTTTA CACGATAGTG GATTGAGCAT TGGCAATGTG
ATAGTAGTCA ACGTGCAGCA AAATGCGGGC GTTGGAAGTC TTGGTTCTTC TAATTCAAAG
TCTAAAACTT ATCGTTTGCG CATAACTGGT AGCGTGCTAG ATAGCAACGA TTTAAACAAT
CCTGATGGCT ATCAATCTAA AGCATTTCGT AACTCTGTGA CGTCTAGATA CCCAATATTT
ACTTCTGCTG CTCCTGATAA CGTGGCTAGC TTGCCGTATA CAGCAATATC GGTGCGTTTG
AATGATGCTC AACGTGTCAA TGTTTTTTCT AAAGATTATC GTGGCATCGT CGACGATGCG
TCTGAACAGA TTCAAGAACG CGTGCAATCT AAGCGAGAAA CAGCTCGACG TAATCAAATT
ATCGACAAAC AAGTTAATTT AGAATTAAAA AATATTATTG CAAACGATCC CAGGCTTCAG
CGCGCTCCAA ATTTTGTTAA AGAGCAAGCA AAAAAGCAAA TTCGTAAACA AATTAAGTCA
GAGATTCAAA AACGTGTTCC TCAAGCTCAA TGGCATATAT CTACTCGTAT AGCTAACGAT
AGTTATGCTA GTTTGCGTTC TGACGTTGCT TCAATACAGT CACTTGGATA CGCTTTCCCG
GCAGTATTTC TTGTTGTAGC AATGATGATG AGTTTAACTG CTATGGCTCG TATGGTTGAA
GAAGAGCGAG GGCTTATTGG CACATACTTA AGTTTGGGAT ACGGTCGTTC TACTGCAGTA
ACAAGACATG CTTTCTTCGC AATATTTGCG TGCTTTGTTG GCGGCGGAAT TGGCGATATT
ATGGGTTTTC TTGCAATCCC TTCACTTTTA CTAAAAATCT TGCGTGGTTT ATACGCCGTT
CCAGACGTTA GGTTGAAGTA TGACTGGCTA TATGGCTCTT TGTGTGTGCT AGCATTTGTG
ATTCCTGTTG CAATATGCAC AATCGTTGTT AGTTGGCGAG AAACAAAGCA AGTTCCTGCA
GCTTTGTTAA GACCAAAAGC TCCAAAAGCT GGTTCTCGCG TTCTTCTTGA AAGGTTGCCT
TGGATTTGGA AGCGAATGAG TTTCTTAAAT AAGGTTACTG TTCGCAATTT GGCGCGATTC
AAAGGCAGAT TGTGCATGAC TATCGGTGGA GTTGCCGGTT GCACAGCGCT TATTGTTTGC
GGTCTTGCTT TGAACGATAC TGTTGCGACC TTGGGTATTC GCCAATACGA GGGAATTTAT
CGATACGATA TGATTTCTAT CTCGGCTCCA GGATCTTTCC AAAATATGAA GAAAAGCGTT
GAGCGAGACA AGTCAAATAA TAAAGTAGAA ACTATACTTC CAGCTTATGT GGGCTCTGGA
GAAATAGCTA AAAATCAATC AAATAAGTCG CATAGTCGTC ATGTTGAGGA TGCTGAAAGC
GTGCAGTTGA TTGTTGTAAA AGACACAAAA GCTTTGTCTT ATCTTGTAAA TTTGCAGGAT
GTGGGCAATA ATTTGCAAGC TATTAAACTT ACGGATGAAG GTCCGTTGCT TTCTCAAAGT
GCTGCTGCAT CTCTGGACAT TACTCGTGGT AGTGAAATTA ATGTGACGAA TACTAGTTTT
AAACGTGCGA AAGTTAAAGT TAAAGCTATT GTTCGTAATC TTATTGGTTC TAATATTTAC
ATGACTGAAC GTTGCTACGA ACGCTTATTT AATGGAGAAA ACAGTAAGCT TTTGAAACAT
AATGCGTTAA TTTTGCGTTT GCGAGGTAGC GATAATAATA AAATTAAATA TGCCGACAAG
GTTTCTGAAC GTGACGGTGT GCTTGCTGTT ATGAATATTA CGCGTATGAA GCATGCTTTT
AGTTTTGATC TTATGAATGC TGTTGTTGCT TTAATCGTAA CTTTGGCTGC TGGCTTAGCT
TTAGCTGTGC TTTTTACTCT TGCAAGTACT AATATTTCGG AACGTACTCG CGAAATGGCT
ACGCTAAAAG TTCTTGGTTT TTATCGTAGA GAAGTTCATT CCTATGTGCA TAAAGAAATG
CTTACTTTAA CTGTTATCGG CATTGCAGTT GGATTGCCAT TAGGAAGGCT TATTGCAGGA
TTGTTGACTA GCGCGCTTCG TATGCCGTCT TTGTATTTTG AAGTTGAAGT AGCTCCTTTA
AGCTATTGCA TTGCTGGCGT TGCAACACTA ATTTTTGCGT TAATTGTGCA ATGGGCTACC
AACCCAGCTT TGGATCGCAT AGATCCAGTA AGCTCACTTA AAAGTGTGGA ATAG
 
Protein sequence
MRKVAAVSKQ SDNKNANNGG EVKRMHSLLP IVFISAIRMW VREWRRFCVL AVIAMLGVAV 
MTGIYAGCND MFLATNDMYA KLHAYDLQIV STLGLTKDDV AALRALPSVS EVEAERSWKA
TAHATDDAKS SYAMNFVHYV ESQKNLNRLH LLKGNMPKNN SEAVVTQRFL HDSGLSIGNV
IVVNVQQNAG VGSLGSSNSK SKTYRLRITG SVLDSNDLNN PDGYQSKAFR NSVTSRYPIF
TSAAPDNVAS LPYTAISVRL NDAQRVNVFS KDYRGIVDDA SEQIQERVQS KRETARRNQI
IDKQVNLELK NIIANDPRLQ RAPNFVKEQA KKQIRKQIKS EIQKRVPQAQ WHISTRIAND
SYASLRSDVA SIQSLGYAFP AVFLVVAMMM SLTAMARMVE EERGLIGTYL SLGYGRSTAV
TRHAFFAIFA CFVGGGIGDI MGFLAIPSLL LKILRGLYAV PDVRLKYDWL YGSLCVLAFV
IPVAICTIVV SWRETKQVPA ALLRPKAPKA GSRVLLERLP WIWKRMSFLN KVTVRNLARF
KGRLCMTIGG VAGCTALIVC GLALNDTVAT LGIRQYEGIY RYDMISISAP GSFQNMKKSV
ERDKSNNKVE TILPAYVGSG EIAKNQSNKS HSRHVEDAES VQLIVVKDTK ALSYLVNLQD
VGNNLQAIKL TDEGPLLSQS AAASLDITRG SEINVTNTSF KRAKVKVKAI VRNLIGSNIY
MTERCYERLF NGENSKLLKH NALILRLRGS DNNKIKYADK VSERDGVLAV MNITRMKHAF
SFDLMNAVVA LIVTLAAGLA LAVLFTLAST NISERTREMA TLKVLGFYRR EVHSYVHKEM
LTLTVIGIAV GLPLGRLIAG LLTSALRMPS LYFEVEVAPL SYCIAGVATL IFALIVQWAT
NPALDRIDPV SSLKSVE