| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0132 |
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| Symbol | |
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| ID | 8708892 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 151561 |
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| End bp | 152262 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482251 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003373397 |
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| Protein GI | 283782643 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCATATA TAACTTTTGA TCATGTAGTG AAAGAATACC CATCAGGTTC TGGTGCTGTG
CGAGCTTTAG ATGATGCCAG TTTTACTGCA CAAAGCGGTG AGCTTACAGT AATCTTAGGT
GCATCTGGCG CTGGAAAAAC TACAGCATTA AATATTTTGG GCGGTATGGA TACTGCGACA
AGCGGTCGTG TTGTTGTTGG CGATTGCGAT GTTACTAAGC TAAAAGGTCG TAATTTGGTT
CGCTACCGCA GAGAAGACAT TGGTTTTGTT TTTCAATTTT ATAATTTAGT TCCAAATTTA
ACTGCTCTTG AAAACGTAGA GCTAGCTTCG CAAATTTGTG CAGATCATTT TGACCCTGCT
CAAACGCTTA TTGATGTTGG CTTGAAAGAA AGGCTTCATA ATTTCCCAGC GCAACTTTCT
GGCGGTGAGC AGCAACGCGT ATCTATTGCG CGCGCTCTTG CTAAAAAACC TAAACTATTG
CTATGTGACG AGCCTACTGG TGCTTTGGAT TATGAAACAG GTAAGGCAGT ATTGCAATTA
TTGCAAGATA TTTGCCGAAC TGAAGGCATG ACAGTGCTGA TTATTACTCA TAATGCTGCC
ATTGCTCCGA TGGCTCACAA AGTTGTTCGT TTCCGTTCTG GAAAAGTTGT AGACGAAACT
GTGCAAGAAC ATCCTATGGC TATAGCCGAT ATTGAGTGGT GA
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| Protein sequence | MAYITFDHVV KEYPSGSGAV RALDDASFTA QSGELTVILG ASGAGKTTAL NILGGMDTAT
SGRVVVGDCD VTKLKGRNLV RYRREDIGFV FQFYNLVPNL TALENVELAS QICADHFDPA
QTLIDVGLKE RLHNFPAQLS GGEQQRVSIA RALAKKPKLL LCDEPTGALD YETGKAVLQL
LQDICRTEGM TVLIITHNAA IAPMAHKVVR FRSGKVVDET VQEHPMAIAD IEW
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