Gene HMPREF0424_0131 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0131 
Symbol 
ID8708901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp150831 
End bp151451 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content44% 
IMG OID646482250 
Producthypothetical protein 
Protein accessionYP_003373396 
Protein GI283782642 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAATAG CATCTGAAGA AATACAGCAG CAACTCGATC GTATAGTGGC ACTTGGGTAT 
CCAGATGTGG CTGATATGAG TGCCGATGCT TTTCGTAAGT TGGCAAATCC TATATTGTGT
GCGCTTGAAA ATAGTAGTTT AGGTGCGAAT ATTTTATTGG TTCCTACGCG TGAATTAGTT
TCGCCTGAAT CGTTGATTTC TCGTACGAGT ATTAATCGTA TGGCTGGATT CACCACTATG
CCTCCGCGAG ATATCATAAG TTTTCTTCCC AAAGACGGGT ATGAGTTTCC TAAAGGCCCG
TTCTATATAG TCGTCGATCC ACATACTGGC TCATCGTATT TGAATCGAGA GCCTGATGTC
GCTCGTAAGC TTATTGATTC TGATGAACGT TTGCCTCTTA CTCTTGAGGA AGGGCTTGCT
ATTGCAACAC AGCATCCAGA TTGGCTTGAA AGCAAGAATG GATTTAATTT GCTTGGTTCG
CAAAGCGCAG ATGGGCGTGT GCCAAGTATA TGGATGAGTC AGTGTGCTCC GCGTTTAGGT
GCTGTTTGGC CAAATTCTCG TCATACTTGG CTTGGTAATG CATATTGCAT GGAAAGATGT
GGAGTGTCGT CGCTGAAGTA A
 
Protein sequence
MSIASEEIQQ QLDRIVALGY PDVADMSADA FRKLANPILC ALENSSLGAN ILLVPTRELV 
SPESLISRTS INRMAGFTTM PPRDIISFLP KDGYEFPKGP FYIVVDPHTG SSYLNREPDV
ARKLIDSDER LPLTLEEGLA IATQHPDWLE SKNGFNLLGS QSADGRVPSI WMSQCAPRLG
AVWPNSRHTW LGNAYCMERC GVSSLK