Gene HMPREF0424_0130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0130 
Symbolasd 
ID8709131 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp149711 
End bp150778 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content43% 
IMG OID646482249 
Productaspartate-semialdehyde dehydrogenase 
Protein accessionYP_003373395 
Protein GI283782641 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0136] Aspartate-semialdehyde dehydrogenase 
TIGRFAM ID[TIGR01296] aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAATTA TCAACGAAAA AGGCGTGAAC GTGGCAGTAC TTGGCGCAAC TGGCCAAGTT 
GGTATGGTAA TGCGTCGAGT GCTTGACGAG CGCGATTTTC CAATAAAAGA TTTACGTTTT 
ATGGCTTCCG CTCATTCTGC TGGCACAGTT TTGCAATATC GTGGCAAAGA CGTAGTCGTA 
GAAGATGTAG AAAAAGCAGA TTTGCACGGA ATTGACATAG CTATTTTTTC TGCAGGCGGC 
GGAACTTCAA AAATTTGGGC TCCGAAATTC GCTGAAGCTG GCGCAATTGT AGTAGATAAT 
TCTTCGCAAT GGCGTATGCA TAACGATGTG CCTTTGGTAG TTGCGGAAGT AAACCCTGAA 
GATTTAGATA CTATTCCAAG AGGAATAGTA GCAAATCCAA ATTGCACAAC TATGGCTTGC 
ATGCCTGTAT TAAAGCCGCT TGCTGATGCT TTTGGATTAA AACGTTTAAT TGTTTCGTCT 
TACCAAGCTG TTTCTGGCGC CGGTCGAGCC GGTGCTTTGC AACTCATGAA TGAGGCTCAA 
GCTGCATTAA ACCAAGGAGC AGATAAACTC GTTTTCGACG GTAGTGCAAT AGATTTCCCT 
GAACCTACAA AAGTTGCTTG TACTATTGCT TTTAATGTAG TGCCTTTTAT TGGTTCAATA 
GTTGATGACG GTTCTGAAGA AACTGACGAA GAACAAAAAT TGCGCAATGA AAGCCGTAAG 
ATTTTGCATT TGCCAAATCT TGCAGCCTCA TGTACTTGTG TGCGCGTAGG TGTTTTCACT 
GGTCACGGCA TGAGTGTAAA CGCTGAGTTT GAGCATGATG TAACTCCAGA CATGGCTCGC 
GAAGTATTAA GCAAGGCTGA AGGAGTTGAG CTTAACGATA TTCCTACTCC TCAGCTAGCG 
GCAGGAAAGT CTGCAAGTTA TGTTGGTAGA ATTAGGCAAG ACCAAGCGAT CGATGGAAAT 
AAGGGATTGG CACTTTTCAT CACTAACGAT AATTTGCGAA AAGGTGCTGC ACTAAATGCT 
GTGCAATTGG CTGAAATTAT TGCTAAAAAG CGTAATTTCC TAAACTAA
 
Protein sequence
MTIINEKGVN VAVLGATGQV GMVMRRVLDE RDFPIKDLRF MASAHSAGTV LQYRGKDVVV 
EDVEKADLHG IDIAIFSAGG GTSKIWAPKF AEAGAIVVDN SSQWRMHNDV PLVVAEVNPE 
DLDTIPRGIV ANPNCTTMAC MPVLKPLADA FGLKRLIVSS YQAVSGAGRA GALQLMNEAQ 
AALNQGADKL VFDGSAIDFP EPTKVACTIA FNVVPFIGSI VDDGSEETDE EQKLRNESRK 
ILHLPNLAAS CTCVRVGVFT GHGMSVNAEF EHDVTPDMAR EVLSKAEGVE LNDIPTPQLA 
AGKSASYVGR IRQDQAIDGN KGLALFITND NLRKGAALNA VQLAEIIAKK RNFLN