Gene HMPREF0424_0121 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0121 
Symbol 
ID8709927 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp142522 
End bp143097 
Gene Length576 bp 
Protein Length191 aa 
Translation table11 
GC content38% 
IMG OID646482242 
Producthypothetical protein 
Protein accessionYP_003373388 
Protein GI283782634 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATTG AAGAAGTTCT TGCTGGAATG ATTGCTGCAT TACGTTCTGG TTCTACTTTT 
GCAATGATTG TTCACAGTGA CTCTAAGTCT CAACAATGTA TTTGCAGTAA TGCAGTTAAT 
ACAAAAATTA TTTATAAATG GCTTTATGAA CGTTGTTTTC CAAAGAAGCG CAATATGAAT 
AAGACTCAAC GTCGTCAGCT TGAAAAACAT ATGCATACTG TTTCTGAAAG TCTTATGGCT 
TCATATGAAT TGAGTAATAC TCTTGGTTGC GTTATGGCAG AATGTGTGGA AGCTACGGCA 
GCGTCATATC ATGCTCAGAA GCGTGCAGAA GATTTACGTG CTGACGTAGC TGCAATGCCA 
AAAGCAACAA TAAAATTACT TACTGCTCTA CCTATTTTGG CTCTTTTTGC TGGTGAATTA 
CTAGGTGGTC ACCCTATTTT GATGTTAATT ACAACAGTAA ATGGATGGAT TTTATTAACA 
ATAGGTGGAA TATGTTATGG ATTGGGTTTG GCGTGGGTTA GTTCTATGTT GCAAATATCT 
CAGCATGCAA TGGATGCTGC TTCGCTGGAA GGATGA
 
Protein sequence
MDIEEVLAGM IAALRSGSTF AMIVHSDSKS QQCICSNAVN TKIIYKWLYE RCFPKKRNMN 
KTQRRQLEKH MHTVSESLMA SYELSNTLGC VMAECVEATA ASYHAQKRAE DLRADVAAMP 
KATIKLLTAL PILALFAGEL LGGHPILMLI TTVNGWILLT IGGICYGLGL AWVSSMLQIS 
QHAMDAASLE G