| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0120 |
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| Symbol | |
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| ID | 8709219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 141416 |
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| End bp | 142492 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482241 |
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| Product | type II/IV secretion system protein |
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| Protein accession | YP_003373387 |
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| Protein GI | 283782633 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGTAA ATAATATTCG TGATATCGAT TTTGGAATTC TGCAGGAATT TGCCAATGAC
GTAAGAGTCA CAGACATGGT TGTAAGCGAG TCTGGTCGTG TGTGGGTAGA TTGTGGGCAA
GGTCTTAAGG AACGCGCAAC TCGAGTTCCG CTTAACAACC CTGCTTTGTT AAGAGAATAT
GCTGTATGGC TTTGTGCACA ATTAGGCAAA AGACTGGATG ATGCGTGTCC TATTGCTGAT
GCTTCAAGTA CTTCTGGCAT TCGCATACAT GCTGTTTTAG CGCCACTTGT ATCTCAAGGA
GCAGCATTGT CAATTCGTTT TCCTTCAATT AATCGTTATG ATCTTGTTTC TTTGAGTGAT
CAAGGCATGT TTCCAAAAGA ATTGTCTTGT ATTCTAAGCG TTCTAGTTAA AAAGCGAGCA
AATATAATGA TCACTGGAAG TACTGGATCT GGGAAAACCA CACTTATGAA GGCTTTGTTG
GCTGCTGCTG ATTGCGAAGA TCGTATTGTA TCTGTTGAAG AAATTAGAGA GCTTGGCGAG
TTGACGCAAA ATCATGTTTC GTTAAGTGCG CGAGAAGCTA ATGTAGAAGG TGTAGGAGAA
ATTGGCTTAT CTCAATTAGT AAAAGCAACA TTAAGAATGC GTCCGGATCG CATTATTCTT
GGTGAATGTC GTGGGGAAGA AATTGCTGAT TTGTTGAGAG TGTTTACTTC CGGGCATAAG
GGTGGAATGA CAACTCTTCA TGCAGATGAA ATAGAAAAAG TTCCCGCTCG TCTTATGGCA
TTAGGGTTAT TGGCTGGGTT GGAGCCTGCA GCTTTATGTG CTTTAGCTGC TGGAGCATTC
GATGTTGTTA TTCATGTAGA GAGATCCTCT AACGGGCGTC GAATGATCAA AGAACTCGGT
ATTTTGCAAT ACGCTTCTAG CGCTTCGTTG CTGTGCGGCG TTCCAGTTTT GCAATTATCT
TGTGGAATTG ACGGCAGTAT TGTCATGAAA TTTTTGCCTG CATGGGTTAA GTTTTCAAAT
TATTGGAATC TTCCCGAAAA TATGGCAAGC GTATGTGTTG ACAGTTCAAA TAATTAG
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| Protein sequence | MIVNNIRDID FGILQEFAND VRVTDMVVSE SGRVWVDCGQ GLKERATRVP LNNPALLREY
AVWLCAQLGK RLDDACPIAD ASSTSGIRIH AVLAPLVSQG AALSIRFPSI NRYDLVSLSD
QGMFPKELSC ILSVLVKKRA NIMITGSTGS GKTTLMKALL AAADCEDRIV SVEEIRELGE
LTQNHVSLSA REANVEGVGE IGLSQLVKAT LRMRPDRIIL GECRGEEIAD LLRVFTSGHK
GGMTTLHADE IEKVPARLMA LGLLAGLEPA ALCALAAGAF DVVIHVERSS NGRRMIKELG
ILQYASSASL LCGVPVLQLS CGIDGSIVMK FLPAWVKFSN YWNLPENMAS VCVDSSNN
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