Gene HMPREF0424_0110 details

Gene Information

• Locus tag: HMPREF0424_0110
• Symbol: rho
• ID: 8709503
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 130733
• End bp: 132703
• Gene Length: 1971 bp
• Protein Length: 656 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 646482231
• Product: transcription termination factor Rho
• Protein accession: YP_003373377
• Protein GI: 283782623
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 28
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGCAACAG GCCAGAATCT TGAAAAAATG AAGCTTTCAG AATTGAAAGA TCTTGCGAAA 
CAAATGGGTT TGCGTGGTAC ATCTACAATG CGTAAGCCTG AGTTGGTGGC TACACTGACG 
GCTGCTCGTA ATGGGGGAGA AGCGCCTGCA GGTGTAAGTG TGCGTGTTCC TCGTGATGTT 
GTGAATGCTA ATAAAACTGC AGATACTAGT ACGGATATAG AAGATGTTAG GTCATCGAAA 
GACAATAGTG ATTTAGAAGC GTTAGAAGTT TTGGTTCCCA ATGCTGCTTC AGATCGTCGA 
TATAGAGACG AAGAAGATTT TGGGAATAAA AATTATCGAC GCGATGCGAA TCGTAATAAT 
ACATTCCAGC GTCGTCGTTC CTCAGAAGAT CGTAATGATA ATCGCGATCG TAGAGAAGAT 
GGGATGGATT CGCATGAGTT GGATCAAATT TTGGCAACAT TACCTGGTGA AGATTCTCAC 
GCAGAGGGTG AGCAGCGTCG TCAGCGTGTA GCTTCTCGTG ACTTTGATAG AGAAGAACAG 
CAAAATCGTG CTGATCGTTT CCAGCGTCGT ATGCGCGGTC GTGCGCGTGA TTACGATGAG 
TCTCGTTCAG ATTATTCAGA TCGACAGAAT CGTTCAGAAC GCATGGATCG AGTAGAACGT 
GACGATCGTG ATGAACGTCG TGCTGAGCGT GGAGAACGTC AAGATCGTAA TGATCGCAAT 
GTTCGTCTTG ATCGCGATGC GCGTGATGCA CGTGACTCTC GTGAAGAACA TGATTTACGC 
GAGATTCGCC GTGAAGAGCC TCAGGAAGAG CTCGTACCAG TAGCCGGAAT TGTTGATGTC 
TTAGAATCTT ACGCATTTGT GCGCACTTCT GGTTATTTGC CTGGTCCTAA CGATGTGTAT 
GTTTCAATGA GCCAAATTAA AAAATATGGT TTACGCAAGG GTGATGCAGT TCAAGGCTCC 
ATTCGTGCTC CTCGCGAGGG TGATCGCAGG AATCAGCGTC AGAAGTTTGT TCCGTTGCAA 
ACTGTTAATA GCATTAATGG CATGAGCGTT GAAGAAGCTC AGTCTCGACC GCAATTTGCT 
AAGTTGACGC CGTTATATCC GCAGGAGCGT TTAAAGCAAG AAACTACTCC TAATCGCATG 
TTGGGACGTG TCATTGATTT AGTTGCCCCA ATTGGTAAAG GTCAGCGCGG TTTGATTGTG 
TCGCCACCAA AGGCTGGTAA AACTATTACT CTTCAGAATA TTGCAAATGC AATTACTACA 
AATAATCCTG AAGTGCATCT TATGGTTGTG CTTGTCGATG AGCGTCCAGA AGAAGTTACC 
GATATGGAAC GCACTGTGCA AGGCGAAGTG ATTTCTTCTA CATTCGATCG TCCTGCAACG 
GATCACACTA CTGTTGCTGA GCTTGCTATT GAGCGTGCTA AGCGTTTGGT TGAGCTTGGT 
CAGGATGTTG TGGTTTTGCT TGATTCTATG ACTCGTTTAG CTAGAGCCTA CAATATTGCT 
GCTCCTACTT CTGGTCGTAT TCTTTCCGGT GGTGTTGATG CTCAGGCGTT GTACCCACCA 
AAGAAGTTCT TCGGTGCTGC TCGAAATATT GAAGATGGCG GCTCTTTGAC TATTATTTCT 
TCTGCATTGG TTGAAACCGG CTCTAAGATG GATGAAGTAA TCTTCGAAGA GTTTAAGGGC 
ACTGGAAATA TGGAATTGCG CTTGAGTAGA GATTTGGCTG ATAAGCGTCT CTTCCCAGCA 
GTAGATATTA ATGCCTCTGG AACTCGTCGT GAGGAGTTAA TTACTCCAGC TGCAGATTTG 
CCAGTTATTT ATCGTTTGCG CCGTCTCTTT GGTGGTCTTG AGGCAGAGCA AGCGTATCAG 
ACTTTGATTC CTCGATTGAA GAAAACTGCT TCAAACCGTG ATTTCTTAGC TGCTATAACT 
CAACAAACTG GCACTGCTAC GAATAATTCT TCTTCTACGA CTATTGCGTA G 

 

Protein sequence

MATGQNLEKM KLSELKDLAK QMGLRGTSTM RKPELVATLT AARNGGEAPA GVSVRVPRDV 
VNANKTADTS TDIEDVRSSK DNSDLEALEV LVPNAASDRR YRDEEDFGNK NYRRDANRNN 
TFQRRRSSED RNDNRDRRED GMDSHELDQI LATLPGEDSH AEGEQRRQRV ASRDFDREEQ 
QNRADRFQRR MRGRARDYDE SRSDYSDRQN RSERMDRVER DDRDERRAER GERQDRNDRN 
VRLDRDARDA RDSREEHDLR EIRREEPQEE LVPVAGIVDV LESYAFVRTS GYLPGPNDVY 
VSMSQIKKYG LRKGDAVQGS IRAPREGDRR NQRQKFVPLQ TVNSINGMSV EEAQSRPQFA 
KLTPLYPQER LKQETTPNRM LGRVIDLVAP IGKGQRGLIV SPPKAGKTIT LQNIANAITT 
NNPEVHLMVV LVDERPEEVT DMERTVQGEV ISSTFDRPAT DHTTVAELAI ERAKRLVELG 
QDVVVLLDSM TRLARAYNIA APTSGRILSG GVDAQALYPP KKFFGAARNI EDGGSLTIIS 
SALVETGSKM DEVIFEEFKG TGNMELRLSR DLADKRLFPA VDINASGTRR EELITPAADL 
PVIYRLRRLF GGLEAEQAYQ TLIPRLKKTA SNRDFLAAIT QQTGTATNNS SSTTIA