Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0109 |
Symbol | |
ID | 8709306 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 128776 |
End bp | 130395 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 646482230 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_003373376 |
Protein GI | 283782622 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1232] Protoporphyrinogen oxidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGGATA CACAATCCCC AAAGGAATCT GTGGTAATTA TTGGTGGTGG TCCGGCAGGG TTGACGGCAG CCTGGGAACT CGTTAAGGAT GGCGGATCTA GCCGCTACGA CGTAACAGTG CTCGAAGCCA CGCGTGAGTT TGGTGGCATT TCGCGTACTG TGAAGTATAA CGGCAATCGT ATGGATATTG GCGGTCATCG TTTCTTCTCA AAAGATGACC GTATTATGCA GTGGTGGCGT GAAATGCTAC CTCTCCAGGG TGCGCCTTCA TATGATGATA AAAAGCTTGG TCGTCATCAT GATTTGGAAG CAGGTGGACC TGATCCTGAA GTTGAAGATG AAGTGATGTT GAAGCGTCAT CGCGTTTCTC GTATTTTCTG GAATCATCAT TTCTTTGATT ATCCAATTTC TCTTTCTGCA GCAACCTTGC GTTCTATGGG CTTTATCTTG ACTATGAAGG TTGGCTTCAG CTATTTGTGG TCTATGATTC ACAAGTTGCC AGAAACTAAT CTTGAGAATT TCTACATTAA TCGTTTCGGC AAGAAACTTT ATTCCATGTT CTTTGAGGGC TATACAGAGA AGCTTTGGGG TAGACATCCA AGCCAGATTT CTGCCGATTG GGGTGCTCAG CGCGTTAAGG GTTTGAGCAT TGTGGAAGTG TTGAAGAACG CTTTTTCCAA GCTTTTCCCT AAGAAAAAAG GCAAGGAAAA GGAAGTAGAA ACCTCATTAA TTGAGGAATT CTGGTATCCA AAGCTTGGTC CTGGTCAGTT GTGGGAAACG GTTGAGCGTC GTTGCCGCGA AAACGGTGCT ACTGTGCGCA CAGACGCAAA GGTAGTTGCT ATTAAGCAAG CAGACGGAAA GATTTCCAGT GTTGTAGTTG AAGATGCAAA TGGAGAGCGT TCAGAATTGC ACGCCGACCA GTTTATATCT TCTATGCCAA TTAAGGATTT GGTAGCTGCT CTTGAGCAGG GTGCAAATGG TGACGAAAAG GCTGAAGTTC CAGCAGAAAT GCAACGCGTT GCCAAAGGTT TACCTTATCG CGATTTTGTG ACTGTAGGCT TGCTTGTTAA GCGCGTGCGT CTGCGTAATA CTACCACTAT TCCAACGCTT GGTAATCCTC CTATTGTTCC TGATTGCTGG ATTTACGTGC AGGATCCTGG ATATAAAGTC GGACGTTTGC AAATCTTCAA CAACTGGAGC CCATATCTCG TTAAGGATGT TGATAACACT GTTTGGATTG GTCTTGAGTA CTTCTGCGAC GAAGGCGACG ACTTCTGGAA TATGAGTGAT GATGATGCTC GCAAGATGGC TATTGACGAG TTGACTCGTA TGCAGGTTAT CAATGGTGAG GAAGATGTTC TTGATTCTCA CCGTGAGCGA GTTCCAAAGG CATATCCTGC TTACTTTGAC ACATACGCTC AGATGCCTGA ATTGATTGAT TATCTTGATG GCTTTGGTAA TTTGTATTGT GTTGGTCGTA ATGGACAGCA TCGTTATAAT AACCAAGATC ATTCAATGGC AACTGCTATT GAGGCTGTAG AAGATATCCG AACTGGAGAA ACTTCTAAGA AGAACGTGTG GTCTGTTAAT ACTGAAAAGT CGTATCACGA AAAGAAGTAG
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Protein sequence | MTDTQSPKES VVIIGGGPAG LTAAWELVKD GGSSRYDVTV LEATREFGGI SRTVKYNGNR MDIGGHRFFS KDDRIMQWWR EMLPLQGAPS YDDKKLGRHH DLEAGGPDPE VEDEVMLKRH RVSRIFWNHH FFDYPISLSA ATLRSMGFIL TMKVGFSYLW SMIHKLPETN LENFYINRFG KKLYSMFFEG YTEKLWGRHP SQISADWGAQ RVKGLSIVEV LKNAFSKLFP KKKGKEKEVE TSLIEEFWYP KLGPGQLWET VERRCRENGA TVRTDAKVVA IKQADGKISS VVVEDANGER SELHADQFIS SMPIKDLVAA LEQGANGDEK AEVPAEMQRV AKGLPYRDFV TVGLLVKRVR LRNTTTIPTL GNPPIVPDCW IYVQDPGYKV GRLQIFNNWS PYLVKDVDNT VWIGLEYFCD EGDDFWNMSD DDARKMAIDE LTRMQVINGE EDVLDSHRER VPKAYPAYFD TYAQMPELID YLDGFGNLYC VGRNGQHRYN NQDHSMATAI EAVEDIRTGE TSKKNVWSVN TEKSYHEKK
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