Gene HMPREF0424_0109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0109 
Symbol 
ID8709306 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp128776 
End bp130395 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content45% 
IMG OID646482230 
ProductFAD dependent oxidoreductase 
Protein accessionYP_003373376 
Protein GI283782622 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1232] Protoporphyrinogen oxidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGGATA CACAATCCCC AAAGGAATCT GTGGTAATTA TTGGTGGTGG TCCGGCAGGG 
TTGACGGCAG CCTGGGAACT CGTTAAGGAT GGCGGATCTA GCCGCTACGA CGTAACAGTG
CTCGAAGCCA CGCGTGAGTT TGGTGGCATT TCGCGTACTG TGAAGTATAA CGGCAATCGT
ATGGATATTG GCGGTCATCG TTTCTTCTCA AAAGATGACC GTATTATGCA GTGGTGGCGT
GAAATGCTAC CTCTCCAGGG TGCGCCTTCA TATGATGATA AAAAGCTTGG TCGTCATCAT
GATTTGGAAG CAGGTGGACC TGATCCTGAA GTTGAAGATG AAGTGATGTT GAAGCGTCAT
CGCGTTTCTC GTATTTTCTG GAATCATCAT TTCTTTGATT ATCCAATTTC TCTTTCTGCA
GCAACCTTGC GTTCTATGGG CTTTATCTTG ACTATGAAGG TTGGCTTCAG CTATTTGTGG
TCTATGATTC ACAAGTTGCC AGAAACTAAT CTTGAGAATT TCTACATTAA TCGTTTCGGC
AAGAAACTTT ATTCCATGTT CTTTGAGGGC TATACAGAGA AGCTTTGGGG TAGACATCCA
AGCCAGATTT CTGCCGATTG GGGTGCTCAG CGCGTTAAGG GTTTGAGCAT TGTGGAAGTG
TTGAAGAACG CTTTTTCCAA GCTTTTCCCT AAGAAAAAAG GCAAGGAAAA GGAAGTAGAA
ACCTCATTAA TTGAGGAATT CTGGTATCCA AAGCTTGGTC CTGGTCAGTT GTGGGAAACG
GTTGAGCGTC GTTGCCGCGA AAACGGTGCT ACTGTGCGCA CAGACGCAAA GGTAGTTGCT
ATTAAGCAAG CAGACGGAAA GATTTCCAGT GTTGTAGTTG AAGATGCAAA TGGAGAGCGT
TCAGAATTGC ACGCCGACCA GTTTATATCT TCTATGCCAA TTAAGGATTT GGTAGCTGCT
CTTGAGCAGG GTGCAAATGG TGACGAAAAG GCTGAAGTTC CAGCAGAAAT GCAACGCGTT
GCCAAAGGTT TACCTTATCG CGATTTTGTG ACTGTAGGCT TGCTTGTTAA GCGCGTGCGT
CTGCGTAATA CTACCACTAT TCCAACGCTT GGTAATCCTC CTATTGTTCC TGATTGCTGG
ATTTACGTGC AGGATCCTGG ATATAAAGTC GGACGTTTGC AAATCTTCAA CAACTGGAGC
CCATATCTCG TTAAGGATGT TGATAACACT GTTTGGATTG GTCTTGAGTA CTTCTGCGAC
GAAGGCGACG ACTTCTGGAA TATGAGTGAT GATGATGCTC GCAAGATGGC TATTGACGAG
TTGACTCGTA TGCAGGTTAT CAATGGTGAG GAAGATGTTC TTGATTCTCA CCGTGAGCGA
GTTCCAAAGG CATATCCTGC TTACTTTGAC ACATACGCTC AGATGCCTGA ATTGATTGAT
TATCTTGATG GCTTTGGTAA TTTGTATTGT GTTGGTCGTA ATGGACAGCA TCGTTATAAT
AACCAAGATC ATTCAATGGC AACTGCTATT GAGGCTGTAG AAGATATCCG AACTGGAGAA
ACTTCTAAGA AGAACGTGTG GTCTGTTAAT ACTGAAAAGT CGTATCACGA AAAGAAGTAG
 
Protein sequence
MTDTQSPKES VVIIGGGPAG LTAAWELVKD GGSSRYDVTV LEATREFGGI SRTVKYNGNR 
MDIGGHRFFS KDDRIMQWWR EMLPLQGAPS YDDKKLGRHH DLEAGGPDPE VEDEVMLKRH
RVSRIFWNHH FFDYPISLSA ATLRSMGFIL TMKVGFSYLW SMIHKLPETN LENFYINRFG
KKLYSMFFEG YTEKLWGRHP SQISADWGAQ RVKGLSIVEV LKNAFSKLFP KKKGKEKEVE
TSLIEEFWYP KLGPGQLWET VERRCRENGA TVRTDAKVVA IKQADGKISS VVVEDANGER
SELHADQFIS SMPIKDLVAA LEQGANGDEK AEVPAEMQRV AKGLPYRDFV TVGLLVKRVR
LRNTTTIPTL GNPPIVPDCW IYVQDPGYKV GRLQIFNNWS PYLVKDVDNT VWIGLEYFCD
EGDDFWNMSD DDARKMAIDE LTRMQVINGE EDVLDSHRER VPKAYPAYFD TYAQMPELID
YLDGFGNLYC VGRNGQHRYN NQDHSMATAI EAVEDIRTGE TSKKNVWSVN TEKSYHEKK