| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0107 |
|---|
| Symbol | |
|---|
| ID | 8708900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 127462 |
|---|
| End bp | 128370 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646482228 |
|---|
| Product | acetyltransferase, GNAT family |
|---|
| Protein accession | YP_003373374 |
|---|
| Protein GI | 283782620 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1670] Acetyltransferases, including N-acetylases of ribosomal proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAAA CCAATGATGG TGTTATTAAC TCTCGCGAGT TACCAAAATC TATAGTAATT
CCTCAAATTC GTGGAGAGAT GGCGCACCTT CGTCCAGCTA CGTGCAATGA TTTGCAAAGA
ATGGATGATT TGTGCGCATT TGATGGTGCT GCAGTTATTA CTGGAAAGGA TGCTAATTCA
GAGCGTTCTA TGGTTCATTC GTGGGTTGAA AGCTCTATGC AATGGACTAA AGATAGTCTT
ATTGGCGAAA ATCCTTCTGA ATCTTGTCGT TTTGCTGGCG ATGTTCAATT GCGTCACACT
ATTGCGTGGG CGATTGTTCC TGATGTTTTG GATGATTCAA ATAACGCTTC CGGCGACATT
ATTGGCATGA TTTTCCTTAT AGATATTGAC GGATGGTCTC GCAGTGCTCG AATTCAAGTT
GTTTTAGGCA AAAATTATCG AGGAAGAGGC TATTCGCGCG ATGCGATGCC TAGAGTGATG
ACTTATGCTT TTGCATCAGA GCCGACTGGT CTAGGGTTGC ATAGAATTTG GGTGGGAGTT
CCGGCAACTA ATACTCGTTC GCTTTCGGTG TATCAATCGC TTGGCTTTGT AAAAACAGGC
ACTGCGCGCG ATGCATTATG GGATGCCCAG AATCAAAAAT ATCAAGATTT TGTTGTAATG
GACACTCTTG TAGATGAATA TGATGCTATT CGCTCGCTAG ATGCTTTTGG GTTACACGTT
ATTGAAGAAA ATCCTGGTGT AATTGAAGCT TTGAGTGCGC ATGAACATTC TGTGGCTATA
CCTGTGCATC GTGATAATCT TGATGAAGCA TGGCCGTACA ATGTAAACGT CTCTGAAGGA
AGTTCATCAA AAAAAGCTTG GTGGCGCATT ATAGGTCGTG GACGCAAACG TAATACGGAA
GGTAAGTAA
|
|---|
| Protein sequence | MQQTNDGVIN SRELPKSIVI PQIRGEMAHL RPATCNDLQR MDDLCAFDGA AVITGKDANS
ERSMVHSWVE SSMQWTKDSL IGENPSESCR FAGDVQLRHT IAWAIVPDVL DDSNNASGDI
IGMIFLIDID GWSRSARIQV VLGKNYRGRG YSRDAMPRVM TYAFASEPTG LGLHRIWVGV
PATNTRSLSV YQSLGFVKTG TARDALWDAQ NQKYQDFVVM DTLVDEYDAI RSLDAFGLHV
IEENPGVIEA LSAHEHSVAI PVHRDNLDEA WPYNVNVSEG SSSKKAWWRI IGRGRKRNTE
GK
|
|---|
| |