| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0106 |
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| Symbol | gatB |
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| ID | 8709488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 125706 |
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| End bp | 127205 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646482227 |
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| Product | GatB/GatE catalytic domain protein |
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| Protein accession | YP_003373373 |
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| Protein GI | 283782619 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) |
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| TIGRFAM ID | [TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.930811 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAAA AACTTATGAA ATACGCCGAT GCTGTGGAGC AATTTGACCC AGTTTTCGGC
TTGGAAACTC ACGTTGAGCT TAGCACTCGT ACGAAGCTGT TCTGCCCAGC AGAAGTATCT
TTTGGCGGCG AACCAAACAC TCAGCTAACA CCTGTAAGCC TTGGTTTGCC AGGCTCTTTG
CCAGTTGTAA ACAAGACTGC AGTTGATTAC GCGATTAAGC TTGGCTTAGC GTTACATTGC
GAGATTGCTG AGTGGAGCCA GTTCGCTCGT AAGAACTACT TCTACCCAGA TATGCCTCGC
GATTACCAGA TTTCCCAGTA CGATAAGCCT ACTAATGGCA ACGGCTACTT GGATGTTGAG
CTGGAAGATG GCACTGTGTT CCGCGTTCCG ATTGAGCGCG CTCACATTGA GGATGACGCT
GGCAAGAATA CTCACGTTGG CGGCGCAGAT GGCCGAATCG AAGGTGCAAA TCATTCTTTG
GTTGATTACA ATCGCGCAGG CGTGCCTTTA ATCGAGATTG TAACTAAGCC AATCGAAGGT
GCTGGCAGCC GCGCTCCAGA AATCGCAGGC GCATACATGC GCGCTATTCG CGATATTGTT
CGCGCTCTCA ACATCTCCCA CGCTCGCATG GAGCAGGGCA ATATGCGCGC AGACGTAAAC
GTTTCGCTTC GCAGAAAGCC AACCGATTCG TTCGGCACAC GTTCTGAAAC TAAGAATGTG
AACACATTCC GCGGTATTGA AAAGACGCTG CAATATGAGA TTCGCCGTCA GGCTGCTATT
TTGAGCGAAG GCGGCGAGAT TTTGCAAGAG ACACGTCACT GGGATGAGGC AACTCAGACT
ACTGCTGGCG GCCGCGTAAA GTCTGACGCC GACGATTATC GCTACTTCCC AGACCCAGAT
TTGGTTATGC TTCACATTAC TAAAGAGCAT ATTGAGCGCA TGAAGGCACA AATGCCAGAA
ATGCCTCGCG AGCGCCGCAA CCGCTTGCAA AGCGAATGGG GTATTAGCGA TCTTGAAATG
CGCGATATTC TTAACGCGGA TGCTCTTGAT TTGGTTGAAG AAACCGTTAA GGCTGGAGCA
ACTGCAGCTG GTGCTAAAAA GTGGTGGCTT GGTGAGCTTG CTCGCGAAGC AAACACTCGT
GGCGTAACTT TGGAAGAATT GCCTATTACT CCACAAGACG TTGCGCAAGT TGAAAAGCTA
ATTGCAAGCG GCAATCTTAA CGATAAGCTC GCTAAGCAAA CTGTTGCATG CGTTTTGGCT
GGCGAGGGTA AGCCTGATGA AGTTGTTAAG AAGCACGGAT TCAAGGTTAT GAACGACGAC
GGTGCTTTGG AAGCTGCTGT TGACGCTGCT CTTGCAGCCG ATCCTGAAGT TGCCGAAAAG
CTTAAGTCTG GAAACATGAA GCCGATGGGT GCAATTATTG GCGCTGTTAT GCGTGCGACT
AAAGGTCAGG CTGATGCTAA GGCTGTTACT AAGATTGTGA TGGCAAAAAT CAAAGGCTGA
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| Protein sequence | MAEKLMKYAD AVEQFDPVFG LETHVELSTR TKLFCPAEVS FGGEPNTQLT PVSLGLPGSL
PVVNKTAVDY AIKLGLALHC EIAEWSQFAR KNYFYPDMPR DYQISQYDKP TNGNGYLDVE
LEDGTVFRVP IERAHIEDDA GKNTHVGGAD GRIEGANHSL VDYNRAGVPL IEIVTKPIEG
AGSRAPEIAG AYMRAIRDIV RALNISHARM EQGNMRADVN VSLRRKPTDS FGTRSETKNV
NTFRGIEKTL QYEIRRQAAI LSEGGEILQE TRHWDEATQT TAGGRVKSDA DDYRYFPDPD
LVMLHITKEH IERMKAQMPE MPRERRNRLQ SEWGISDLEM RDILNADALD LVEETVKAGA
TAAGAKKWWL GELAREANTR GVTLEELPIT PQDVAQVEKL IASGNLNDKL AKQTVACVLA
GEGKPDEVVK KHGFKVMNDD GALEAAVDAA LAADPEVAEK LKSGNMKPMG AIIGAVMRAT
KGQADAKAVT KIVMAKIKG
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