| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0103 |
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| Symbol | |
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| ID | 8709832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 121784 |
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| End bp | 123334 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482224 |
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| Product | thiol-activated cytolysin |
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| Protein accession | YP_003373370 |
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| Protein GI | 283782616 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.258222 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAGCA CAAAGTTCTA CCGTAATGCA GCAATGTTGT TGCTCGCGGG CGCGACTATT
ATTCCACAAT GCTTAGCAGT TCCAGCAATG GCAGATTCTT CTGCAAAGCC TTCTGCACCA
GCTGCATCTT GTGCAGCTAG CAAGGACTCG CTGAACAACT ACTTGTGGGA TTTGCATTAC
GATAAAACGA ATATTCTCGC ACGTCACGGC GAAACAATTA ACAATAAATT CTCTAGCGAT
AGCTTCAACA ATAACGGTGA ATTCGTTGTT GTTGAGCACC AGAAGAAGAA CATCACAAAT
ACAACATCAA ACTTGTCGGT AACTTCGGCC AACAATGATC GCGTATATCC GGGTGCATTA
TTCCGCGCTG ACCAGAATTT GATGGATAAC ATGCCAAGCT TGATTTCAGC AAATCGTGCT
CCATTAACTT TGAGTATTGA TTTGCCAGGC TTCCATGGCG GCGAGAGTGC TGTAACCGTG
CAACATCCAA CCAAGAGCTC CGTTACTTCA GCAGTTAACG GCTTAGTTTC TAAGTGGAAT
GCACAATATG CAGCAAGCCA TCATGTGGCA GCTCGTATGC AGTATGATTC CGCAAGCGCA
CAGAGCATGA ACCAGCTCAA AGCTAAGTTT GGTGCTGATT TTGCAAAGAT TGGCGTACCG
CTGAAGATTG ATTTCGATGC AGTACACAAG GGTGAGAAGC AGACTCAAAT TGTGAACTTC
AAGCAAACTT ACTACACAGT AAGCGTTGAC GCTCCAGATA GCCCAGCAGA TTTCTTTGCT
CCATGCACTA CGCCAGAAAG CTTGAAGAAC CGTGGCGTTG ACAGCAAACG CCCACCAGTT
TACGTATCAA ACGTAGCTTA TGGTCGCTCA ATGTACGTAA AGTTCGATAC CACCAGCAAG
AGCACTGATT TCCAGGCTGC AGTAGAAGCA GCAATTAAGG GCGTAGACAT CAAGCCAAAC
ACCGAATTCC ATCGCATTCT CCAGAATACC TCTGTTACTG CAGTGATTCT CGGCGGCAGC
GCTAACGGTG CAGCAAAGGT TATTACCGGC AATATCGATA CGCTAAAGGC TTTGATTCAG
GAAGGTGCAA ATTTGAGCAC CTCTAGCCCA GCTGTTCCAA TCGCTTACAC TACTTCCTTC
GTAAAAGATA ACGAAGTAGC AACTCTCCAG AGCAACAGCG ATTATGTTGA GACTAAGGTT
TCTGCTTACC GTGACGGTTA TTTGACCTTG GATCATCGTG GGGCTTATGT AGCTCGCTAC
TACGTCTACT GGGATGAGTA CGGCACTGAT ATCGACGGAA CTCCATACGT ACGTTCTCGC
GCTTGGGAAG GAAACGGCAA GTATCGTACC GCTCACTTCA GCACAACGAT TCAGTTCAAG
GGCAATGTGC GCAATCTTCG CATTAAGTTG GAAGAAAAGA CCGGCTTAGT ATGGGAACCA
TGGCGCACAG TGTACAACCG TACTGATTTG CCGTTGGTTC GCCAGCGCAC AATCAAGAAC
TGGGGTACAA CTTTATGGCC TCGCGTCGCT GAAACTGTAA AGAATGACTG A
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| Protein sequence | MKSTKFYRNA AMLLLAGATI IPQCLAVPAM ADSSAKPSAP AASCAASKDS LNNYLWDLHY
DKTNILARHG ETINNKFSSD SFNNNGEFVV VEHQKKNITN TTSNLSVTSA NNDRVYPGAL
FRADQNLMDN MPSLISANRA PLTLSIDLPG FHGGESAVTV QHPTKSSVTS AVNGLVSKWN
AQYAASHHVA ARMQYDSASA QSMNQLKAKF GADFAKIGVP LKIDFDAVHK GEKQTQIVNF
KQTYYTVSVD APDSPADFFA PCTTPESLKN RGVDSKRPPV YVSNVAYGRS MYVKFDTTSK
STDFQAAVEA AIKGVDIKPN TEFHRILQNT SVTAVILGGS ANGAAKVITG NIDTLKALIQ
EGANLSTSSP AVPIAYTTSF VKDNEVATLQ SNSDYVETKV SAYRDGYLTL DHRGAYVARY
YVYWDEYGTD IDGTPYVRSR AWEGNGKYRT AHFSTTIQFK GNVRNLRIKL EEKTGLVWEP
WRTVYNRTDL PLVRQRTIKN WGTTLWPRVA ETVKND
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