Gene HMPREF0424_0098 details

Gene Information

• Locus tag: HMPREF0424_0098
• ID: 8709527
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 117131
• End bp: 117898
• Gene Length: 768 bp
• Protein Length: 255 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 646482219
• Product: hypothetical protein
• Protein accession: YP_003373365
• Protein GI: 283782611

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.15256
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCAGAAT TACAAGAGGA ACGTGCGGAA CTTAAGCGCA TGCTTTGTGC GGATATGAGT 
GCGAAACCAT TTAGTGAACT GTTTTCTGTT ACTTTTAATC AGCGCGGCTC CAAGTTGGTT 
GGTGATGTTC TTTTTGACGC AATTGAGAAA GCTGGGTATT CGTTAGAGCG CGATGTTGAC 
GCTGTTGGTG CGTTAACTGC TGCTGCAGTT CCAATGGTTT TTGCGCTTAT TCATGCTGCA 
GAACGTAAAG GAATTGCACT CGACGGCTTT GTTATGGATT TTGTTTTTCC TGCAACAAAA 
GGTCCGTCAG TTAAAGGCAA GCGAGTATTA TTGCTTGACT CTTGGCTTTC TGAAAAATCG 
TATGTTCAAA CTTCTTCGCT TGTGACTTTA CGACACGGAA ATGAATTAAG TCTTGATTTT 
GGTATTGTTA ATCAGCAAGG CGCGCAAATT CTTGCTATAG TTGCATTAAT TGGTGGTGTT 
GACGCCGACG AACAAGGCAC AAGGCATCTT CAATTAGTAA ATCCAATAAG TGAGGAGAGT 
ACTAAAATGG CATTTGTTCA AGCTTTCGGT GAAGAAGAAT TACGTGCAGA TGCAGATCAC 
GACGATTGCT GCAACGACAA TTGCTGTGGC GGTCATTGTG AGGTTAAATG CACTGGTGAT 
TGTGCTCATG ATGGTTGCAC TGAGCCATGC TGTGAAGATA ACTGCTGTGG CGGTCATTGC 
AAGTCAGGTT GCACAGGAGA TTGCGCAACA GACGGCTGCC AAGACTAG 

 

Protein sequence

MAELQEERAE LKRMLCADMS AKPFSELFSV TFNQRGSKLV GDVLFDAIEK AGYSLERDVD 
AVGALTAAAV PMVFALIHAA ERKGIALDGF VMDFVFPATK GPSVKGKRVL LLDSWLSEKS 
YVQTSSLVTL RHGNELSLDF GIVNQQGAQI LAIVALIGGV DADEQGTRHL QLVNPISEES 
TKMAFVQAFG EEELRADADH DDCCNDNCCG GHCEVKCTGD CAHDGCTEPC CEDNCCGGHC 
KSGCTGDCAT DGCQD