Gene HMPREF0424_0096 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0096 
Symbol 
ID8710024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp114947 
End bp115678 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content38% 
IMG OID646482217 
Producthypothetical protein 
Protein accessionYP_003373363 
Protein GI283782609 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.168357 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAATA ATTTTCGCGC TTGGCTTGAA GGTAGGCATT ATATTGTTGC AATCGTTGCA 
ATTTTATTGT CCGTAGTCCT TCCTTCTTTA ATGCTTGTTA TATTCAGATC ATTTGTAACG 
CAGTTGCCAG TTTATGTTGG TTATATTTGT TTGCCAGATT CTGCTAATGT GCATAATGCG 
GTAGAAGGTA TAACGTTTCA ATGTCAATCT GGTAGTAGTG CTGTTAATTT TGTTGTTCCT 
CTGTATGAAG TTATTGTAGT TGGGTTTATT GCCGCGGCAT TCGTTTGTCT TGCTCCGATT 
ATGGTATCGT GGGAACGTTT CGTGATGAAA AGGTTGCGAA TATATGCATT GAGTGCTGCT 
TTATTGTGTT TGTTTGTTTC ATTTGGCGCT TCAGTGTTAA TTGTTCGTAT AATTGATTTG 
CAGTTATTGA GTACATTGCA GATGATTTTA GGTAATGCTT GGATTGATAT TGTGCTCATA 
ATGATTGGAT TAGCCTGTTT TGGAAGGTTT TACGGCCTTG CATTTGGTGT ATTTTTAGCG 
GTGATGAATA TTGCCACACA AGGTTTGCAA AGTAAAATTG GATTGATTTT GCGATGGTAT 
CCTTCTGGAA CTTTGCCTGT AATTCCTGGA CAATCCATAT TGTTATACGT CATTGTTGTG 
CTTACTGTAA TTGCAGTTTG CCTATGGAGT GGCACGTGTG GACGTGGATT GCTTTATTTT 
GAACGTGCTT AA
 
Protein sequence
MKNNFRAWLE GRHYIVAIVA ILLSVVLPSL MLVIFRSFVT QLPVYVGYIC LPDSANVHNA 
VEGITFQCQS GSSAVNFVVP LYEVIVVGFI AAAFVCLAPI MVSWERFVMK RLRIYALSAA 
LLCLFVSFGA SVLIVRIIDL QLLSTLQMIL GNAWIDIVLI MIGLACFGRF YGLAFGVFLA 
VMNIATQGLQ SKIGLILRWY PSGTLPVIPG QSILLYVIVV LTVIAVCLWS GTCGRGLLYF 
ERA