| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0092 |
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| Symbol | clpB |
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| ID | 8709077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 109250 |
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| End bp | 111844 |
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| Gene Length | 2595 bp |
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| Protein Length | 864 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646482213 |
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| Product | ATP-dependent chaperone protein ClpB |
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| Protein accession | YP_003373359 |
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| Protein GI | 283782605 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0030598 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAACAAA AGTTTACAAC CTTAGCGCAA GACGCATTAA GTGATGCTGT GCAAAGTGCA
GCGGCTGCTG GCAATGCGCA AGTAGATACG TTACATTTGG CAGATGCTTT ACTTCGTCAA
GAGCAGGGCG TCGTTCGCGC GCTTATTGCG CAAACGGGGG CAGATGCGCA ACAAATCGGT
GCTGAAATTC GCAACGCATT AGTGGCATTG CCTTCATCTA CTGGCTCAAC TACAACTAAG
CCAGATGCAA GTCGTCAGCT TTTGGCTGCG CTAAGCCAGG CAGAAAAAGA GATGCACGCA
ATGGGAGACG AATACGTTTC TACGGAGCAC ATGCTTATTG GCATAGTTGC AAGCGCGCCG
AATGCTGTTG CGGATATTTT CAAAAAGCAC AACGTTTCCG CAGACGCGTT GCGAAAAGCT
GTGCCAACTG TACGCGGTGG CGCAAAAGTG ACAAGTCCGG ATGCTGAAGG TAACTACAAA
GCGCTTGAAA AGTATTCTGT TGATATGACT GCGCGCGCTC GTGAGGGAAA GCTTGATCCA
GTAATTGGAC GCGATCAGGA GATTCGCCGC GTGATTCAGA TTCTTTCTCG CCGCACGAAG
AATAATCCTG TGCTAATTGG CGAGCCGGGC GTTGGTAAAA CGGCAGTTGT AGAAGGATTG
GCTCAGCGAA TTGTGGCAGG GGATGTGCCT ACGACTTTGC AAAACAAGCG TCTTATCAGT
CTTGACTTGG CTTCGATGGT TGCAGGTTCG AAGTATCGCG GCGAGTTTGA GGAACGCTTA
AAGGCAGTGT TGAAGGAAAT TCAACAATCA GACGGTCAAA TTATTACGTT TATTGACGAA
ATTCACACTG TTGTTGGCGC GGGATCTGCA GAAGGTTCAA TGGATGCTGG CAATATGCTT
AAGCCAATGC TTGCGCGCGG TGAGCTGCGC TTGGTTGGCG CGACTACGCT TAACGAGTAT
CGTGAGCATA TTGAAAAGGA TTCTGCGCTT GAACGCAGAT TCCAGCAAGT GTTTGTTGGC
GAGCCATCTG TTGAAGATAC GGTGACGATT TTGCGTGGAC TTAAGCAACG TTACGAAGCG
CACCACAAGG TGACGATTAG TGACGATGCA ATCGTAGCTG CAGCAACGCT TTCAAACCGC
TATATTACCG GTCGTCAGCT TCCAGATAAG GCGATTGATT TGGTGGATGA AGCGGCAGCT
CACTTGCGTA TGGAGCTTGA TTCTCAGCCA GAAGAAATCG ATGAATTGCA GCGCAAAGTT
ACGCGTCTTG AAATGGAGGA AATGCAATTA AAGAAAGCGG AAGATGCTGC TGCGCGCGAA
CGCTTAGAAA AGTTGCAGGA AGAATTGGCA AACTCGCGCG AAAAGCTTGC TGGATTGAAA
GCGCGTTGGG ATGCGGAAAA AGCTGGCCAT AACAAGGTTG GTGATTTGCG AGCGCAACTT
GACGCTAAGC GCGTAGAAGC CGACAAATTC ACACGTGAAG GCAACTTGGA ACAAGCAAGC
CGTATTTTGT ATGGCGAAAT TCCAAGCATT CAAAAAGCTT TGGAAGAAGC GGAATCACAG
GCTGCTAACG CTAAGAGTGA AGCGAAAGAG CCAATGGTTC CGGATCAGGT TGATGCTGAT
TCTATTGCAG GAGTCGTTAG CGAATGGACG GGCATTCCTG TTGGTCGCTT GATGCAAGGC
GAAAATGAGA AGCTGCTCAA CATGGAAAAG GAGCTTTCTA AGCGTGTGGT TGGTCAAAGT
GAAGCAATTC AGGCTATAGC GGATGCTGTG CGCAGAAGCC GCGCTGGAAT TGCAGACCCT
AATCGCCCAA CTGGTTCCTT CTTGTTCTTG GGTCCTACTG GCGTTGGTAA GACGGAGCTT
GCAAAGGCTC TTGCTGACTT TTTGTTTGAC GACGAGCGCG CAATGGTTCG CATTGATATG
AGCGAGTACA TGGAAAAGGC TTCCGTATCG CGGCTTATCG GTGCTGCTCC TGGTTACATT
GGCTACGAGG AAGGCGGCCA GCTTACTGAA GCTGTGCGTA GACGTCCGTA TTCTGTAGTG
CTTTTTGACG AAGTCGAGAA GGCACATCCA GAAGTATTCG ACGTTTTGTT GCAGGTTTTG
GACGATGGTC GTTTGACTGA CGGACAAGGT AGAACGGTTG ATTTTACGAA TACGATTTTG
ATTATGACAT CAAACTTGGG TTCGCAATTC CTTGTACAAG AAGGCTTGGA CGATGCTGCT
AAACGCAAGG CTGTTATGAA CGCTGTTCAC GCTGAGTTTA AGCCAGAGTT CATTAACCGT
TTGGATGAGC TTGTTATGTT CCATCCGTTG AGCCGCGAAG AGCTTGGTGG AATTGTGGAT
ATTCAAGTTC GTCAAGTGGC TGCACGCTTG AGCGACCGCC GTATTAGCTT GGATGTGAGT
GATTCTGCTC GCGCTTGGCT TGCGGAGCAT GGCTATGATC CAGTTTATGG TGCTCGTCCG
TTGCGTAGAT TGGTTCAAAC GGAAATTGGC GATCAACTTG CGCGATTGTT GCTTTCTGGA
AAGGTGCATG ATGGTGCACG CGTAGTTGCG GATTGTGAGA ATACTAGCGA CCATGTGACC
CTAAAGATTG CGTAG
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| Protein sequence | MEQKFTTLAQ DALSDAVQSA AAAGNAQVDT LHLADALLRQ EQGVVRALIA QTGADAQQIG
AEIRNALVAL PSSTGSTTTK PDASRQLLAA LSQAEKEMHA MGDEYVSTEH MLIGIVASAP
NAVADIFKKH NVSADALRKA VPTVRGGAKV TSPDAEGNYK ALEKYSVDMT ARAREGKLDP
VIGRDQEIRR VIQILSRRTK NNPVLIGEPG VGKTAVVEGL AQRIVAGDVP TTLQNKRLIS
LDLASMVAGS KYRGEFEERL KAVLKEIQQS DGQIITFIDE IHTVVGAGSA EGSMDAGNML
KPMLARGELR LVGATTLNEY REHIEKDSAL ERRFQQVFVG EPSVEDTVTI LRGLKQRYEA
HHKVTISDDA IVAAATLSNR YITGRQLPDK AIDLVDEAAA HLRMELDSQP EEIDELQRKV
TRLEMEEMQL KKAEDAAARE RLEKLQEELA NSREKLAGLK ARWDAEKAGH NKVGDLRAQL
DAKRVEADKF TREGNLEQAS RILYGEIPSI QKALEEAESQ AANAKSEAKE PMVPDQVDAD
SIAGVVSEWT GIPVGRLMQG ENEKLLNMEK ELSKRVVGQS EAIQAIADAV RRSRAGIADP
NRPTGSFLFL GPTGVGKTEL AKALADFLFD DERAMVRIDM SEYMEKASVS RLIGAAPGYI
GYEEGGQLTE AVRRRPYSVV LFDEVEKAHP EVFDVLLQVL DDGRLTDGQG RTVDFTNTIL
IMTSNLGSQF LVQEGLDDAA KRKAVMNAVH AEFKPEFINR LDELVMFHPL SREELGGIVD
IQVRQVAARL SDRRISLDVS DSARAWLAEH GYDPVYGARP LRRLVQTEIG DQLARLLLSG
KVHDGARVVA DCENTSDHVT LKIA
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