| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0088 |
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| Symbol | |
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| ID | 8708874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 105164 |
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| End bp | 105964 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482209 |
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| Product | pyridoxal phosphate enzyme, YggS family |
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| Protein accession | YP_003373355 |
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| Protein GI | 283782601 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
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| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000154646 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCATATA TGGCGCAAAA AGATTTAGCG AATACTGAGG TTGATTGTGT TCGTGCGCGT
CAAATTGCCG ACGGCGTGCA CAGCGTGCAA GACGCCATTG CTCAAGCCGA ATCGCATTAT
GGTCGCAAAG CTGAGTCGGT TACGCTACTT GCCGCAACTA AAACGCGAGA TGTTGGCGAA
ATTATGGCAG CGCTTAAAGC TGGGGTGAGA GTAATTGGGG AAAATCGCCC ACAAGAAATC
GTTGCAAAAG CCGAAATTTT ACGCGCGGAA GCTGCTAGAG AAGGTTTAAG CGTTGGTGTA
AACGGCGAAA TTCCGCTCTA CTTAATCGGT CAACTGCAAA GCAATAAAAT AAACAAAGTT
TTACCACTTG CAAATGGTAT TCAGTCGGTT GACGGCATTG AACTTGCGCA AAAGATATCT
GCTCGCGCGC AAAATTTGGG ACTTTGTGTA GACGTTATGT TGGAAGTGAA CGTTTCGGGA
GAAGCTACGA AATCGGGGTG CGCGCCAGAA CGCGCGATTG ACGAAGCGTT CGCTATATCT
AGTCTTCCGG CACTTAATTT GCACGGATTT ATGACGCTTG GAGCGCGCGT GGATGATGAA
ACAATAGTGA GAAGCGGTTT CGCAAAATTG CGAGAAATTA GAGATTGTGT GAGTAAACAA
CTCGTGCAAG ATTATGATGG AAGCTCTGTA AAATTAGAGC TTTCGATGGG AATGTCTGGT
GATTTTGCGT GGGCGATTGC CGAAGGTTCA ACAATGGTCA GAATCGGTTC GGCAATCTTT
GGCCCACGCG CATTTGTGTA G
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| Protein sequence | MAYMAQKDLA NTEVDCVRAR QIADGVHSVQ DAIAQAESHY GRKAESVTLL AATKTRDVGE
IMAALKAGVR VIGENRPQEI VAKAEILRAE AAREGLSVGV NGEIPLYLIG QLQSNKINKV
LPLANGIQSV DGIELAQKIS ARAQNLGLCV DVMLEVNVSG EATKSGCAPE RAIDEAFAIS
SLPALNLHGF MTLGARVDDE TIVRSGFAKL REIRDCVSKQ LVQDYDGSSV KLELSMGMSG
DFAWAIAEGS TMVRIGSAIF GPRAFV
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