| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0087 |
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| Symbol | |
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| ID | 8708873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 104005 |
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| End bp | 105129 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482208 |
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| Product | tRNA synthetase class I (E and Q), catalytic domain protein |
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| Protein accession | YP_003373354 |
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| Protein GI | 283782600 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0008] Glutamyl- and glutaminyl-tRNA synthetases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000462423 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTTTGCA AGCTTGTGCT TATTAAGAAA AATATTGGAA AAGATTTTAA GAAAGATTTT
AAGAAAGACG AAATCATGTT TTCGAAGTCA ACTATTGCAA TTGGTCGTTT TGCGCCGACT
CCTTCCGGGC GTATGCATAT TGGAAACATG GTAGCAATGT TGGCTGCGTG GCTTTCTGCA
AAATCGCAGG GTGGCCACAT GCTTTTGCGT TTGGAAGATC TTGATATTGC GCGAATGCCG
AAAGATGCTA GCGCGCGAGT TATTGACGAT TTGAAGTGGG CTGGTCTTGA TTGGGTTGGT
GAGCCTACTT ATCAGCATAA GCGCACTGCA ATCTACCAAG AAGCTCTTGA TGCGTTAGAA
TCTTTGCAAG ATGCTGACGG AAATTCGTTG ATTTACCCGT GTTTTTGCTC GCGTTCCGAT
ATTCGTGCAA TCGCAGCTCC GCAAGAAGGC GACGGTTTTA TACGCTACCC GGGTACGTGC
AGAAATCTGT GCAAAACTGC GGAAGGCTTG GCGCAAATCG AAAGGCTTTT GCAAAATAAC
CAGCAACATT CTTTGCGACT TGCAGTGCCG CCTGCTGATT CGCTGCAAGC AAATGTGAGT
TTTGAAGACG CGATTTTTGG CGCGCAATCG TTTAACATTA ATCGCGATTT GGGAGATATG
GTGATTCGCC GCGCGGATGG CGTTTTTTCT TATCAGCTTG CGGTTGTTGT TGACGATGTT
TTGAGCGGAG TAAATGATAT TGTGCGCGGC CGCGATTTGC TTCGTTCGGC AGCGCTTCAA
ATTTGGATTG GTGAGCTGCT TGAAAAATCG GGATTTTTTG CGGCTTATGG CGTGCACTAT
GTGCGTCCGC AATTTGCGCA TTTACCGCTG ATTGATAACG CACAAGGCGA GCGACTTGCA
AAAAGTAAGC ACTCGCTAGA CGTCGGTGCT CTTCGTGAAT CTGGCTGGAG TGCCGAGCGC
ATGATTGGCT ATTGCATGTA TCTTTTGGGA TACAAAAAGC CTGGTCAAAA TCAGCCTGTA
GATATGAGTG CCGACGATGC GCTTGCGTTA TTTAAAAGCC TTGACACGCC GTGGGGTTCT
GTTCGCGCAA ACCTAGCCGA CAAATCCGTG CCCTTCCTCG ACTAA
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| Protein sequence | MLCKLVLIKK NIGKDFKKDF KKDEIMFSKS TIAIGRFAPT PSGRMHIGNM VAMLAAWLSA
KSQGGHMLLR LEDLDIARMP KDASARVIDD LKWAGLDWVG EPTYQHKRTA IYQEALDALE
SLQDADGNSL IYPCFCSRSD IRAIAAPQEG DGFIRYPGTC RNLCKTAEGL AQIERLLQNN
QQHSLRLAVP PADSLQANVS FEDAIFGAQS FNINRDLGDM VIRRADGVFS YQLAVVVDDV
LSGVNDIVRG RDLLRSAALQ IWIGELLEKS GFFAAYGVHY VRPQFAHLPL IDNAQGERLA
KSKHSLDVGA LRESGWSAER MIGYCMYLLG YKKPGQNQPV DMSADDALAL FKSLDTPWGS
VRANLADKSV PFLD
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