| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0086 |
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| Symbol | gla |
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| ID | 8709414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 103173 |
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| End bp | 103904 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646482207 |
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| Product | glycerol facilitator-aquaporin |
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| Protein accession | YP_003373353 |
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| Protein GI | 283782599 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
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| TIGRFAM ID | [TIGR00861] MIP family channel proteins |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000385513 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCAACATT CGTTTATGGC AATGTTGGCT GCAGAATTTA TTGGCACTGC TATTCTCATG
ATTTTCGGAA ACGGTGCTGT AGCAAACGTT GAATTAAAAA ATACTAAAGG ACACCATGCT
GGCTGGCTAA ATATTGCTAT GGGCTACGGT TTTGGCGTGA TGTTCCCAGT GCTCATGTTT
GGCGGAATCT CAGGTGCGCA TATCAATCCT GCTATGACAA TTGCGCAAGC TGTAAACGGC
ATGTTCCCGT GGGCTAACGT TGCGCCTTAT ATTGTAGCTC AGCTTTTAGG CGCGCTGGTT
GGTCAGCTTA TTGTGTACGT AACTTATTTG CCGCATTACA ACGAAACTGA GGAGTCAGAA
GCAATTCTTG GCACTTTCTG CACTACGGAT GCGTATAACA ACAAAATTAA CTACTTCCTT
AACGAGTTCT TCGGCACACT TGTGCTTGTT TTAGCTGCAC TTTGCTGCCT TACTTCTCCT
TGGGGTGAGA AGAATTTGGC TGGCGCTTCA ATCGTCGTTG GCTTCGTTGT TTGGGGCTTG
GTGACTTCTA TGGGTGGTCC AACTGGTCCT GCTTTGAATC CTGCTCGTGA TCTTATGCCG
CGTTTGCTTC ACGCAATTTT GCCAATTCCG CACAAGGGAT CTTCTCGCTG GGGTGAAGCG
TGGATTCCAG TTATTGCTCC TATTGCCGGC GCAATCTTGG GTGTGGTTAT GTATAAGTCG
TTATTTGCAT AA
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| Protein sequence | MQHSFMAMLA AEFIGTAILM IFGNGAVANV ELKNTKGHHA GWLNIAMGYG FGVMFPVLMF
GGISGAHINP AMTIAQAVNG MFPWANVAPY IVAQLLGALV GQLIVYVTYL PHYNETEESE
AILGTFCTTD AYNNKINYFL NEFFGTLVLV LAALCCLTSP WGEKNLAGAS IVVGFVVWGL
VTSMGGPTGP ALNPARDLMP RLLHAILPIP HKGSSRWGEA WIPVIAPIAG AILGVVMYKS
LFA
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