| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0082 |
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| Symbol | dcm_1 |
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| ID | 8709820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 97158 |
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| End bp | 98432 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482203 |
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| Product | DNA (cytosine-5-)-methyltransferase |
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| Protein accession | YP_003373349 |
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| Protein GI | 283782595 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0270] Site-specific DNA methylase |
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| TIGRFAM ID | [TIGR00675] DNA-methyltransferase (dcm) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000000201074 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGTCCAAGA CAATAAAAGT TGCTGAACTT TTTGCGGGAG TAGGTGGGTT TCGTCTTGGG
CTTGAAGGGT ATACGCCTTC TGAGGAAAAC AATTTTACTG CAGAACCAGC AGGACCTTTC
AAAACAGTTT GGGCGAATCA GTGGGAGCCT GCCGGGCAAG AATCCAAGCA ATTTGCGTGG
AGGTGCTATG AGAAGCGTTT TGGCAAAGGT AGCTGTGTTA ATGAAGATAT AGCAGAAGTG
CTCAAAAAAT TCGAACATGG GGAATGTGAT ATTCCAAATT TTGACATGCT TGTTGGTGGT
TTTCCTTGTC AAGATTATTC TGTGGCAAAA CCTTTAGCAT TATCTTCCGG AATTGACGGC
AAAAAAGGAG TTCTGTGGTG GAGCATTAAC AAAATGTTGG AATTACGTCA TCCTAAATAT
GTTCTGCTTG AAAATGTTGA TCGTCTATTA AAATCACCTG CTGCACAGCG TGGTAGGGAT
TTTGCCATTA TTCTCTCTTG CCTTTTTCGA TTAGGATACA GTGTAGAGTG GCGAGTTATT
AATGCTGCTG ACTATGGAAT GCCTCAAAGA CGTAGACGCG TGTATATTTT TGCAGAGCAT
GATTCTAAAA AATGGCCTAA CAAGCTTTCT CGGCTTTTAC AAAATGGTGT TATTGCACGA
GCTTTTCCAG TATCTGTTGC AGAAAAAAAT GCTGCGCAAT ATGAATTTTC TATTAGTGAC
AATCCGTATG TTATATCTCA AGATTTTGGC AAACAAGCTA AGGTGAGCCT ATTTCAGAAT
GCTGGTGTTA TGCAAGATGG AATAGTTTAT ACAGTTAAAA CGGATGCTGT GTTTTCTGGC
AATGCAATGA CACTAGGTAG CGTTCTAGTT GATGCCAATC AAGTGCCTAA AGAATATTGG
ATTGAAGAAG ATAAGCTTGC TTCTTGGCAG TATCTTAAAG GCGGTAAAAG GGAGTTGCGA
ACAGCTTCAA ATGGATTTGA GTACATGTAT TCCGAAGGTC CTGTTGCTTT TCCAGATAAA
ATTGATGCAC CAAGCAGAAC TATTCTTACA GGTGAAGGTG GGAAAAGCGC TAGTAGAACC
AAACATGTTG TTATGCAAAA TGGCAGATTG AGAAGACTTG TTCCAGATGA GCTAGACCAG
TTGCAAATGT TTCCTAAAGG TTGGACGAAT GATGGAATGA GTGATGGTCA TAGAGCGTTT
TGCATGGGAA ACGCATTGGT CACTGGTATT CCGCATAAAA TTGGCGAAGT TCTTGCTAAT
GACATTTTGG CATAA
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| Protein sequence | MSKTIKVAEL FAGVGGFRLG LEGYTPSEEN NFTAEPAGPF KTVWANQWEP AGQESKQFAW
RCYEKRFGKG SCVNEDIAEV LKKFEHGECD IPNFDMLVGG FPCQDYSVAK PLALSSGIDG
KKGVLWWSIN KMLELRHPKY VLLENVDRLL KSPAAQRGRD FAIILSCLFR LGYSVEWRVI
NAADYGMPQR RRRVYIFAEH DSKKWPNKLS RLLQNGVIAR AFPVSVAEKN AAQYEFSISD
NPYVISQDFG KQAKVSLFQN AGVMQDGIVY TVKTDAVFSG NAMTLGSVLV DANQVPKEYW
IEEDKLASWQ YLKGGKRELR TASNGFEYMY SEGPVAFPDK IDAPSRTILT GEGGKSASRT
KHVVMQNGRL RRLVPDELDQ LQMFPKGWTN DGMSDGHRAF CMGNALVTGI PHKIGEVLAN
DILA
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