Gene HMPREF0424_0081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0081 
Symbol 
ID8709563 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp95386 
End bp96582 
Gene Length1197 bp 
Protein Length398 aa 
Translation table11 
GC content45% 
IMG OID646482202 
Producthydrolase, NUDIX family 
Protein accessionYP_003373348 
Protein GI283782594 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0406] Fructose-2,6-bisphosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000209436 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAGTGCAG TAACGACGCA ATACGTTGAA GCAGCTGGCG GAATTATTTA TCGCAAGCGC 
AATACTACAA ACAGCTCAAA TGCAGATGAA GAGACAAAAA CAGACAGCAA TGCAATAAAT
CCAAACCATG CAAATAAGCC AATCAGCGCA ATAAAGTCTA GCGACGACGA TTTTGAGCTT
TGCCTAGTCT ACCGTCCTAA ATATGACGAT TGGAGCTGGC CAAAAGGAAA GAATGAGCCA
AACGAATCGC ATCGCCACAC AGCCGTGCGC GAAGTTGGAG AAGAAACAGG ATATTCAGTC
ACGCTAGGTC CACACATTGC CAAAATAGAG TATCCGCTTG AGCGCGAAGG CAAAAAGTCT
TCCAAGAACA GCTCATCAAA TAACAGCCAA AATCGCAATT CCCAGCCGGA AGTAATAAAG
CGAATCCACT ACTGGATGAT GCGCTTAATC GACAAGCCAA CTGCAGCAAA GCGTCTCCCT
GCTTTCGGAC CAATTAAGCC AGCAAAACCT ACTGAAATTG GCAATGTTTT ATGGCTTACT
CCTTCTCAAG CGCGAAAAAA GCTTACGCAC GATAGCGACC GTGAAGTGCT AGACGCTTTC
TTAGAAAAGC TCCACGCAGG TAAAGCAGAA TACAGCACGT TGCTTCTAGT GCGTCACGGA
AAAGCTGAGT CTCGAAAAAC TTGGCAAGGA AGCGAAGCGA CTCGACCAAT CACACCTCTT
GGAGCAGCCG CATCATACGC TTTAGGCCGT GAGCTTGCCT GCTACGCGCC GAATAAGATC
ATATCGTCAC CTTGGAAGCG TTGCGTTGAA ACGGTTGCGG CTTTTGCACA CGACTCTTCA
CTTTCTATAG AGCAGGTTGC GGAACTTACT GAAGACCATC ACGAGAAACA ACCAAAATCT
ACATTGTCTG TGCTTATAAA CGAAATACAA AATCTTGAGT GCCACACACA AAATACAAGC
GAAACTAGCA ATGCAAGCAC AACTAACAAC GCAACCGTCA TATGCTTGCA CCGACCGGTT
ATTGGCACTT TCTTTGATTA TTTGCGCGAA ATAACAAAAC CTAGAGCACA CAAGCGCATA
TTCAGTCAAA AATCTCCATA TATGCCTACA GGAAGCGCAA TAGTTTTGCA CATAATTAGT
ACTCCTAAAG GCGCTCGCAT TATTGATATT GAAAAGGTTC TTCCAAGTGT CTACTAG
 
Protein sequence
MSAVTTQYVE AAGGIIYRKR NTTNSSNADE ETKTDSNAIN PNHANKPISA IKSSDDDFEL 
CLVYRPKYDD WSWPKGKNEP NESHRHTAVR EVGEETGYSV TLGPHIAKIE YPLEREGKKS
SKNSSSNNSQ NRNSQPEVIK RIHYWMMRLI DKPTAAKRLP AFGPIKPAKP TEIGNVLWLT
PSQARKKLTH DSDREVLDAF LEKLHAGKAE YSTLLLVRHG KAESRKTWQG SEATRPITPL
GAAASYALGR ELACYAPNKI ISSPWKRCVE TVAAFAHDSS LSIEQVAELT EDHHEKQPKS
TLSVLINEIQ NLECHTQNTS ETSNASTTNN ATVICLHRPV IGTFFDYLRE ITKPRAHKRI
FSQKSPYMPT GSAIVLHIIS TPKGARIIDI EKVLPSVY