| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0079 |
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| Symbol | upp |
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| ID | 8709094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 93729 |
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| End bp | 94367 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646482200 |
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| Product | uracil phosphoribosyltransferase |
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| Protein accession | YP_003373346 |
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| Protein GI | 283782592 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0035] Uracil phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000379157 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGATCTTC ATGTTTTACA TCATCCGCTG GTGGACCACA AGCTCACCGT TTTGCGTGAT
AAGAATACAC CTTCTAATAT TTTCCGCGAG TTGGTTTCCG AATTGGTAAC CCTCGAAGCA
TACGAAGCAA CCCGTAATTT GGAAGTTAGC GATCGCGAGA TTGAAACTCC TATTTGCAAG
ATGACTGGCA AGCATTTGAA CCGCCCACGC CCAATGGTTG TGCCGGTTTT GCGCGCTGGT
CTTGGCATGC TCGATGGCAT GACTCGCCTT CTTCCAACCG CTGAGGTTGG ATTCCTTGGC
ATGAAGCGCG ACGAGCAGAC GCTCGACATT GTCACTTATG CCAACCGTTT GCCAGAAGAT
TTGACCGGTC GTCAATGCTT CCTTCTTGAC CCAATGCTTG CCACTGGTGG CACTCTTATT
GCCGCTACGC ATTATTTGGC TGAGCGCGGC GCTAAGGATG TTACTGCTAT TAACATTTTG
GCAGCCCCAG AAGGCTTAGA GCGCTTGGAG AAGGAACTTG ATCCTTCCAT CGATTTTAAG
GTTGTTGTTT GCGCTGTTGA CGAGCATTTG AACGACAAAG CTTATATCGT TCCAGGTCTT
GGCGACGCTG GCGACCGCTT GTATGGTTTG ATTGATTAA
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| Protein sequence | MDLHVLHHPL VDHKLTVLRD KNTPSNIFRE LVSELVTLEA YEATRNLEVS DREIETPICK
MTGKHLNRPR PMVVPVLRAG LGMLDGMTRL LPTAEVGFLG MKRDEQTLDI VTYANRLPED
LTGRQCFLLD PMLATGGTLI AATHYLAERG AKDVTAINIL AAPEGLERLE KELDPSIDFK
VVVCAVDEHL NDKAYIVPGL GDAGDRLYGL ID
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