| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0075 |
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| Symbol | dnaB |
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| ID | 8709722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 89207 |
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| End bp | 90652 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482196 |
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| Product | replicative DNA helicase |
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| Protein accession | YP_003373342 |
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| Protein GI | 283782588 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0305] Replicative DNA helicase |
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| TIGRFAM ID | [TIGR00665] replicative DNA helicase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000995062 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTGGCAAT CTACTAAAGG CAATGTTATC CGCGCAGGGA GCAATCGTGG TGGCAATGGT
GACGCCTCTG CATATGGTTC TGGCGTTGCA AATCGTGGTG CTGAAGTAGG TGCTACGTTG
TTTGATCGTG TGCCTCCTCA CGATGTTGAT GCAGAAATGG CTGTGCTTGG CGGAATGCTT
ATGAGCAAAG ATGCTATTGG CGAAGTGTCT CAATTGCTTG AAACATCAGA TTTTTATTTA
CCGCAGCACC AAACAATTTA TGATGCTATT CTTACGCTTT TTGCAGGATC CCAGCCTGTT
GATGTTGTGC TTGTAGCTAA CGAATTAATG AAAGATGGAA ATCTCGATAA AGTTGGAGGA
GCTGACTATT TGCACAGCCT AGTAGCTTCT GTGCCAACAG CCGCAAACGC AATGTACTAC
GCAGATATTG TGCACCAAAA TGCTGTTCTT CGTAACGTTA TTACTGCTGG CACAAAAATT
GCGCAAATGG GCTATTCTGC TTCCGGAGCG CAAGCAGAAG ATATTGTAAA TCTTGCGCAA
TCAGAAGTGT ATGAGATGAG TGCCGGCAAA GTGCGTCAAG ATTACGTTGC TATTGGCCCA
GTTTTGCAAA ATACTCTTGA TCAGCTCGAT AAAATGCAAA ATCATGAACT TGAGCAAGGT
GTGCCGACTG GATTTAGAGA TATTGACGAA GTTACTCAAG GTTTGCAGCC TGGTCAAATG
ATTGTTGTTG CTGGTCGTCC GGCTATGGGT AAGTCAACAC TTGGCATTGA TTTCGCTCGT
TCAGCAGCAC TGCACCACAA TATGACGTCT ATTGTGTTCT CTCTAGAAAT GAGCAAAGTG
GAATTGGCTC AGCGCATTAT TGCTGCAGAA ACTAATATTC CGCTTGCTGC TATGCGAAGA
GCGGAAGATA TTACTCCGGA TCGTTGGAAT ACTCTTAATA CTTTTTGGAC AAAAATGCAA
AACGCTCCGC TTTTTATTGA TGACAGTCCA AATATGAGCT TGATGGAAAT TCGCGCAAAA
TGCCGTCGTT TGAAGCAAAC TAATGATCTG AAACTGGTAG TTATTGATTA CCTTCAGCTG
ATGAGTTCCG GCAAGCGCGT GGAAAGCCGA CAGCAGGAAG TTTCGGAATT CTCACGTGCG
CTTAAGTTGC TTGCAAAAGA GCTTGAAGTG CCAGTTGTGG CATTGAGCCA GCTTAACCGA
GGGCCGGAAA TGCGAAACGA CAAGAAACCA CAGCTTTCAG ATTTGCGCGA ATCTGGTTCT
ATTGAGCAGG ATGCTGACGT TGTGTTCCTA GTGCATCGCC CTGATTTTTA CAATAAGGAA
GATCGCCCAG GCGAAGCAGA TATTATTATG GCAAAGCATC GTAACGGCCC TACTGACACG
TTTAATCTTG CCTTCTTGGG TGCAACTTCC AAGTTCATGG ATATGCCGCA AGACTACCAG
CAATAA
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| Protein sequence | MWQSTKGNVI RAGSNRGGNG DASAYGSGVA NRGAEVGATL FDRVPPHDVD AEMAVLGGML
MSKDAIGEVS QLLETSDFYL PQHQTIYDAI LTLFAGSQPV DVVLVANELM KDGNLDKVGG
ADYLHSLVAS VPTAANAMYY ADIVHQNAVL RNVITAGTKI AQMGYSASGA QAEDIVNLAQ
SEVYEMSAGK VRQDYVAIGP VLQNTLDQLD KMQNHELEQG VPTGFRDIDE VTQGLQPGQM
IVVAGRPAMG KSTLGIDFAR SAALHHNMTS IVFSLEMSKV ELAQRIIAAE TNIPLAAMRR
AEDITPDRWN TLNTFWTKMQ NAPLFIDDSP NMSLMEIRAK CRRLKQTNDL KLVVIDYLQL
MSSGKRVESR QQEVSEFSRA LKLLAKELEV PVVALSQLNR GPEMRNDKKP QLSDLRESGS
IEQDADVVFL VHRPDFYNKE DRPGEADIIM AKHRNGPTDT FNLAFLGATS KFMDMPQDYQ
Q
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