| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0074 |
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| Symbol | |
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| ID | 8708960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 87765 |
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| End bp | 89126 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482195 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_003373341 |
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| Protein GI | 283782587 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000286401 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAAATC AAAAGTTGGA CAACCAGAAC AAAAAAGACG TACTGCGCAA TATTTGGCTA
CTAGCTGTAC CGACTTTTGG ACAGCTCATA TCTGAGCCGG CATTTGTACT CATTGACACT
GCTATTATTG GTCATATTGG CAAAAGTGCT CTAGCAGGTC TTTCTATTGG ATCAACGGTA
CTTCTTACTA CTACAGGTCT TTGCTTATTT TTGGCTTACA ACACAACTTC ACAGGTTGCG
CGTCTTTTAG GCGCAGGTAA GCGTCAAGAA GGTTTTAGCA TTGGAATGGA TGGATTGTGG
CTTGCATTAT TGCTTGGCAT AATTCTTACA GTCATACTTA TTTTTGCCAC TGAACCGTTA
TGCTACGCAA TAGGCGCGCG TGGCTCTACG TTGCAAAATG CTATTGTGTA CACACAAATG
GTTATGCCTG GATTGCCTGC GATGCTACTC GTATATGCAG CAAATGGCAT ATTTCGCGGT
CTTTGCAACG TGCGCATAAC ATTATTTGCT GCTGTAAGTG GAGCTGTTCT AAATACTATT
CTCGATATAA TCGCAGTATT TGGTCTCAAC ATGGGAATTG CTGGTTCTGG TATTGCAACA
ATGATTGCGC AATGGTATAT GGGACTTGTT CTCACTATTC CTGCAATTAT TTGGGCTACT
CAAAGTGGTG CGCGTCTCAA ACCACATTTT CAGCATATTC TACATTCTGC TGGAACTGGT
ATGCCTTTGT TTGTTCGTAC ACTTGCATTG CGCGTGTGCA TGGTAGCTAC GGTTGTTACT
GCGACCCATC TCGGCACCAA TACTCTCGCT GCGTATCAGG TTGCTAATTC CTGTTGGAAT
TTTGTTATGA ATATTTTGGA TGCAATTGGT ATTGCTGCGC AGACTATTGT TGCTGCAGCG
CTAGGTGCAG GCTGTCGTAA GCGCGCAGGA ATGATTACGC GTATTTGTGC TCAAGTGGGA
GCTGTAAGCA GCGTAGGAGT CGGTTTATTC ATGATTTTCG TGGGTTGGAG TTGCGCGCCA
CTATTTAGTC AGCATACAGA TATTCAATTT TTAATTTCTG TAGGCATGAC AATATTAGGA
TTGTTCTTGC CTCTTGCTGG ATGGATGTGG GCACTAGATG GCGTATTAAT TGGCGCAGGT
GATCACCGTT ACTTAGCAAA AGCTTGCTCA GTAATGGCTG CTGTGTATTT AACATTTTTG
GCGCTCACAA GCGTTTTTGA TGTCGTCGTC GATGCTAATG ACGTGGTAAG AACTATTACT
TTATGGGTTG TTTTAAATGC TGTTTATATT GGGGGGCGTG CAATAGGCAA TAGTTTGCGC
ATAAGAAATG ATACGTGGAT GGATTCTGCG CTAAAAATGT AA
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| Protein sequence | MTNQKLDNQN KKDVLRNIWL LAVPTFGQLI SEPAFVLIDT AIIGHIGKSA LAGLSIGSTV
LLTTTGLCLF LAYNTTSQVA RLLGAGKRQE GFSIGMDGLW LALLLGIILT VILIFATEPL
CYAIGARGST LQNAIVYTQM VMPGLPAMLL VYAANGIFRG LCNVRITLFA AVSGAVLNTI
LDIIAVFGLN MGIAGSGIAT MIAQWYMGLV LTIPAIIWAT QSGARLKPHF QHILHSAGTG
MPLFVRTLAL RVCMVATVVT ATHLGTNTLA AYQVANSCWN FVMNILDAIG IAAQTIVAAA
LGAGCRKRAG MITRICAQVG AVSSVGVGLF MIFVGWSCAP LFSQHTDIQF LISVGMTILG
LFLPLAGWMW ALDGVLIGAG DHRYLAKACS VMAAVYLTFL ALTSVFDVVV DANDVVRTIT
LWVVLNAVYI GGRAIGNSLR IRNDTWMDSA LKM
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