Gene HMPREF0424_0069 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0069 
Symbol 
ID8709443 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp82062 
End bp83477 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content45% 
IMG OID646482190 
Producthypothetical protein 
Protein accessionYP_003373337 
Protein GI283782583 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0105826 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATGGA ATGACGCTCC TCAATTAGAC CCGCGTGCTG TGCAAGCAAC TTCGGTATCT 
GCACAGGACG AGAATGCGTC TTCTCAAGAG CCGCAGGCAC TGAAGATTAC TGCGGCTAGT
TCAAATCCAA AAATGTTTAC ACTGCCTTGG GAATTACCAC TTTCTCAATG GCCTGCTGAT
TTATTCGTGA ATTTGCCGCG TGGTATTTCT CGCCACGTTG TGCGATTTGT TCACGTTGGC
GATGAAGTGT ATGCAATGAA GGAAATTACT CGTCAAGTTG CAGAACGTGA GTATGAGCTT
TTGCGTAGGC TTCGTAAACT TGAGTTGCCT ACAGTTACTC CTATAGCTGT TGTTGCAGGA
CGCCATGACG CTAATGGTGA AAAGCTTGAG GCAATGTTAG TTACGAAACA TTTGAAGTTC
TCACTACCAT ATCGTGCATT ATTTGCTCGT ACGTTGCGTC CGGATACTGC AGAGCGCCTT
ATCGATGCGC TTGCTGTTCT TATGGTGCGC TTGCATCTTT CTGGCTTCTA TTGGGGCGAT
GTATCGCTTT CCAACGTGCT GTTTTTGCGA GATGCAGATG CTTTTTCTGC ATTCCTAGTT
GACGCAGAAA CTGGTGATTT GCATGGAAGT TTAACAGAAG GTCAACGAGA ATACGATATT
GATTTAGCTC GAACCAACAT TATTGGTGAG CTTATGGATT TGAGCTCCGG TCAGCTTTTA
CCGACAGAAG TAGATGAAAT CAGTATAGGC AATCGTCTAG TAGATCGCTA TCATTCGCTT
TGGAGTACGC TTACTGACGT TGATAAGTTC AGTCCTGATG AGATGTGGCG AATTGAACGT
CGTGTTAATC GTCTAAATGA GCTTGGTTTC GATGTTGATG AGTTGGAGAT GAAGACTTCA
GAAGATGGTC GAAGGGTTTT GGTTCGACCT CGAGTTGTGG ATGCTGGCTA TGCTTCCCGC
AAGCTTCTTC GTCTTACTGG ATTGGATGTT CAAGAGAATC AGGCTCGAAG GCTGCTAAAC
GATTTGGATG CATATCGCAC TTCTACATGG CGTCAAGGTG AAGAGCTGGA AATCGTCGCA
ACTGATTGGA TGCGTGAAAT TTTCGAGCCA ACAGTTCGTA TGATACCTCC TGAATTCCGT
TCGCAAATTG AACCAGCTCA GTTCTTCCAT GAAGTGTTGG ATCATCGTTG GTTTATGGCA
GAAAAAGTTG GCCATGACGT TGCTATGCAA GATGCTGTGA CAAGCTATAT TAAAAATGTG
CTTCCTCAGT ACAAAATGGA TAAGCATGTT CTTGCTGCTA TTAATGCAGA TGCTGATTCT
GGCGTTGTGG ATGATGAATA CACGTATTCT TCTCCAGCAC CTGTAGGTCA CGATATAGAT
GAAGATGATC AAGATGCTAG TGTTTGGGCA AGTTGA
 
Protein sequence
MEWNDAPQLD PRAVQATSVS AQDENASSQE PQALKITAAS SNPKMFTLPW ELPLSQWPAD 
LFVNLPRGIS RHVVRFVHVG DEVYAMKEIT RQVAEREYEL LRRLRKLELP TVTPIAVVAG
RHDANGEKLE AMLVTKHLKF SLPYRALFAR TLRPDTAERL IDALAVLMVR LHLSGFYWGD
VSLSNVLFLR DADAFSAFLV DAETGDLHGS LTEGQREYDI DLARTNIIGE LMDLSSGQLL
PTEVDEISIG NRLVDRYHSL WSTLTDVDKF SPDEMWRIER RVNRLNELGF DVDELEMKTS
EDGRRVLVRP RVVDAGYASR KLLRLTGLDV QENQARRLLN DLDAYRTSTW RQGEELEIVA
TDWMREIFEP TVRMIPPEFR SQIEPAQFFH EVLDHRWFMA EKVGHDVAMQ DAVTSYIKNV
LPQYKMDKHV LAAINADADS GVVDDEYTYS SPAPVGHDID EDDQDASVWA S