Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0067 |
Symbol | |
ID | 8709182 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 79485 |
End bp | 80444 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 646482188 |
Product | hypothetical protein |
Protein accession | YP_003373335 |
Protein GI | 283782581 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1651] Protein-disulfide isomerase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0337879 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATCAAC AACAAGAAAC AACAAATAAT GAAATGCAAA AATCAAATAC CCCTTATAGT AAAAGCTTAA TTGGCATCGT AATAGCACTA ATTATTCTTG CATTCGCTGC AGGAGCTGGG TTTATGACTT ATTACAATTC AATCAATAAA CCACAAGTAA AAATTGAAAA TCCAACAACC AATAAGCCAG ATACACAAAC TGAGGATACA GCAGACTCCC AAATAACCAA AGAGATTAAA AAATTGCCTT CTTCTGACAT CCCACCAGCA TCTAATTTAC AAGGCGGAAT TCTTCTTAGC AAGGATGGGT ACGGCAAGCA AGCTGCTGGT GCTCCTACAG TTGCCACTTA TTTTGATCCT TTGTGCCCTG GTTGCGGATC CTTTAATCGT ACTGTTGATG AAACTTTAAT TAAAATGGTT GAAGCAGGTC AAATTAACCT AGAACTTCAC CCAATGTCAT TCTTAAATCG TTTTAGCTCA GATCAATATT CTTATCGCGT CTCAGGCGGT ATTGCCTATA TCGCTTCGCA CGACAACGAT CCAAAGCATT TGCTTAAGTT CATCAATAGT ATTTTTAGCG AAAGATTCCA GCCGGAAGAA GGCGACGGAT ACCAAGCAAC ACCAAATAAA GCTCTTATTG ATTTAGCTGA AGATGCTGGA GTTGCAGATA AGATTGCGAA TGAAGCATTT AACTTACACT ATGTTAAGTG GCAAGAAGTT ATTAATGAGA ATACTCCAGA AGAAAAAGCT TTATGGAATG TTTCTGGCTC TAATAAAGGC GCTATGACAA CTCCAACAGT AACAATTAAC GGTAAGCTAG TAGATCTCAA TGCAGCTTCT GAAAAGCAAA TGGATCCTTT GGAAGCTATA TTAAAGTCTT TGGGAATCGA TAAAAAACAT GTTGGCAAAT CTGGTCATAT GCCGAAAGTT ACGTATAAGA GTAAGCCGCT TGATTTATAA
|
Protein sequence | MDQQQETTNN EMQKSNTPYS KSLIGIVIAL IILAFAAGAG FMTYYNSINK PQVKIENPTT NKPDTQTEDT ADSQITKEIK KLPSSDIPPA SNLQGGILLS KDGYGKQAAG APTVATYFDP LCPGCGSFNR TVDETLIKMV EAGQINLELH PMSFLNRFSS DQYSYRVSGG IAYIASHDND PKHLLKFINS IFSERFQPEE GDGYQATPNK ALIDLAEDAG VADKIANEAF NLHYVKWQEV INENTPEEKA LWNVSGSNKG AMTTPTVTIN GKLVDLNAAS EKQMDPLEAI LKSLGIDKKH VGKSGHMPKV TYKSKPLDL
|
| |