Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0066 |
Symbol | |
ID | 8709038 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 78418 |
End bp | 79389 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 646482187 |
Product | hypothetical protein |
Protein accession | YP_003373334 |
Protein GI | 283782580 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1651] Protein-disulfide isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0355055 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTAAAA TTCAGATGCG TGATAATAAG CAGGGAGATT CATCTGCTAC TCGCCTACAA AGAACTATAG AAAATCGCGA ACGTGCAGCG CGTGAGGCGC GTGAGCGTCG TCAGCAAGCA ATTATCGGCG TTATTGTAGT AATTATTGTT GCGGCTATGT TGGCTGCTGT AGGCATTACT GCGTATCAGG CAGCTTACGT TCAGCCTCAG AAAAAAATAG AGCAATCTGC AAAATCTAAT CATAATTTGG ATAATATTGA TCCAAGTATT CGTCCAAGCG GTGTTAATTC TAAGAATGGC ATTCTTTTTA GCAAGGATGG GTACGGCAAG CAAGCTGCTG GTGCTCCTAC AGTTGCCACT TATTTTGATC CTTTGTGCCC TGGTTGCGGA TCCTTTAATC GTACTGTTGA TGAAACTTTA ATTAAAATGG TTGAAGCAGG TCAAATTAAC CTAGAACTTC ACCCAATGTC ATTCTTGGAT GGACTTTCTA CTGACCATTA CTCGACTCGT GTTTCTAGTG CTATTGCTTA TATCGCTTCA TATGATAACA ATCCAAAGCA TTTGCTTCAG TTTATCAATG GCATTTTTAA CGAAAAATTC CAGCCGGAAG AAAGCGAGGG ATATAAGCCT GTAAGCAATA AAGAGTTGAT TAAACTGGCT AAGAAATCTG GAATTCCAAA CGAAATTGCA AGTAAAGCTT TTAACCGCCA ATATTTGAAG TGGCAGCTGC TAGTTAATAA ATACACTCCT GATCGTAAGG AATTGTGGAA TGTCAGCGGT CCAAATAAAG GATCTATGAC AACGCCGACT GTAACTATTA ACGATAAATT GCTTGATATG AATGCCATTA ATGAGAAAAA AATGAAGGTG CTTGATGCTC TGCTTCATTG CATCGGCCTG GATAAAAAAC AAGTTGGAGT TGCAGGTCAG ATGCCTAAAG TGTCTGACAC TAGTTCCCCT ATTGCATTGT AA
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Protein sequence | MPKIQMRDNK QGDSSATRLQ RTIENRERAA REARERRQQA IIGVIVVIIV AAMLAAVGIT AYQAAYVQPQ KKIEQSAKSN HNLDNIDPSI RPSGVNSKNG ILFSKDGYGK QAAGAPTVAT YFDPLCPGCG SFNRTVDETL IKMVEAGQIN LELHPMSFLD GLSTDHYSTR VSSAIAYIAS YDNNPKHLLQ FINGIFNEKF QPEESEGYKP VSNKELIKLA KKSGIPNEIA SKAFNRQYLK WQLLVNKYTP DRKELWNVSG PNKGSMTTPT VTINDKLLDM NAINEKKMKV LDALLHCIGL DKKQVGVAGQ MPKVSDTSSP IAL
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