Gene HMPREF0424_0061 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0061 
Symbol 
ID8709635 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp72664 
End bp73290 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content40% 
IMG OID646482182 
Producthypothetical protein 
Protein accessionYP_003373330 
Protein GI283782576 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.424927 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCAAG AATACGACGA ACGTATTGCT CGTAAAGCTT TCATGTATCA AAGAAAAAGA 
TCTGTACTCA CTACAGTGGG CGTAGGCTTG GGCGTCACTT TTATATTTGC TTTACTTGTG 
CAATTCCACG CTTTTGGCAT AAATTCTGTG CGTGCTCCAA AAGATAACCC AAATTACGGC 
GTTCCAGCTC CATGCGCAAT AATAGGAAAA GAAGGAGCCA AAGCCCCTTA CGTAGATAAT 
AGAGCTGTAG CAATCAGAGT TCTCAACGGC ACAAAGTTCC GCGGCCTTGC TCGCGCGGTT 
GGCGAAGCTT TAAACGCTCG CGGATTTAAC TTAACAGAAG TTAACAATAA CAAATCCAGT 
AACATTAAAC GAACAATCAT TTACTTTGGA AAAAACGCTA TTAATGAAGC TTATACAGTA 
AACGCTAATT TTACCGATGC AATTATGCGA ATGGATGATA GAAAAGATAA GCTCGTCGAT 
ATTGTGCTTG GCTCTACTTT TAATAATCTT CGCCCTAAAG TAGATGTTCC AGCAGCAGGC 
GCAACAATAC ATGAAGTGCA AGGATGTATA AGAGCTGATC TTATGAAAAA CATTCCTAAG 
GCAGATCAGC ATAAGGAAGT TAAATAA
 
Protein sequence
MTQEYDERIA RKAFMYQRKR SVLTTVGVGL GVTFIFALLV QFHAFGINSV RAPKDNPNYG 
VPAPCAIIGK EGAKAPYVDN RAVAIRVLNG TKFRGLARAV GEALNARGFN LTEVNNNKSS 
NIKRTIIYFG KNAINEAYTV NANFTDAIMR MDDRKDKLVD IVLGSTFNNL RPKVDVPAAG 
ATIHEVQGCI RADLMKNIPK ADQHKEVK