Gene HMPREF0424_0055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0055 
Symbol 
ID8709004 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp63765 
End bp65984 
Gene Length2220 bp 
Protein Length739 aa 
Translation table11 
GC content38% 
IMG OID646482178 
Producthypothetical protein 
Protein accessionYP_003373326 
Protein GI283782572 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACCTC GGTTAGGAGA TATTGTACTA AATCGATACG TACTAGTATC GCTTTTGCGC 
AACGAAGCAG GCTTGCAAGT ATGGCAAGCC AATGACCGCA TACTTACGCA GGATTGCCAG
CTTTTTATTG TACGAGATTC ACGTTTTTTG CCGCAAGTAA ATACAATTGC ATCAACTTTG
GCTTTATCGC ATAGCCGCAA GTTTACGCAA GTACTTCAAT TACGGCATCA TGATTCTGTT
GCAATTATTG TTACAGCTTT AGATCGCGGT ATTACTATCA ATGATTATTT GGCTCTTAAA
AAAGCACCTT TAAGCTACGA AGCAATAAGA ACTATTGTTG CAGAAACTGC ACAAGCTTTA
AGCAGATTAC TTGCTAGCAA TATTACTCAC CACGCTGTTT CTAGTGACAC TGTTCGCATA
AGTTCTTCAG GAATTGAGTT AGCAGATACT CCAGTAAGTC CTCTTTTGGA AGATGTGACT
CAAAAAGATG ATGATCAAAT TCCAAGGCAA AATGTTGAAC ATATTGCAAC TAAGCAACTT
GCATCATTGT TATACACTTT GATTACTAGA ACTTCTTCTC GAATACAAGC TCGTTTTGAT
GCGTCTCTTT TGCCAGATAA TACTCCTTCA GAATTTAGGA TGATTTGCAC AAGAAGCCTA
GCTTCAAATA AAAATAACAA CGTAATACCT ATGGCGTCTA TTGCAGAATT AGTAGCATTA
TTAGGTTCAT ACACGCCTTT ATCGAAGCTC ACAACAAGAG ATATTGTGCT TGATGGTAAA
ACAAGTGTTG CTTCTATTAG CAATGTTCGA CTTCGCGAAG CAAAAGATGA TTGTATACTA
CCTTTGCCTG AAGGTCTTTC ACAAAGTGAA GAAGAATTTG ATGCACAATT AATGCAAAGA
AATAATCAGG ATTCTAACGA TTTTTCTTCA ACTAATTCAG CCAACACTAT TTCAAATAAT
ACAAATGGAT CCGCTAAGTT AAGTGATAGC TTCAAAAATG CTGGAAGAAC ATTGGGATCT
CTTCTTAAAA GAAGCAATAC TAACTCAGAT TCTGAAGGCA TTGGTAACAA TAGTTTTAGT
GACGAAACTA ACACTAATAC AGATATAGAT TTTCATGATA TTGCAGCAGC AGAAATAGCT
AGCATTCTCG CTCCTACAGA ACTTGATACA GACGATGCTC TTTTCCCAAC ATTGTCTGCT
TCATATAAAC ATTTTCCCGA TACTGCTACG TCTAAAAATA TTTTTGATCA CGTTGAAAAT
ACAAGAAATC AAACTTCCAA AAATACTATT AGCGAAACAG GCGTAGTTAG TAGTTTTGAT
TTTGGGCATC TTCTTACTGA AAATAATCAA CACACAGAAT TAATCTCAAG ACCACAAAAC
TTAACTTCAG AAGGCGAAGC TACTGGTCGC GTTCCTGTTG TTGATTCTCA CGGAAGATTT
GTAGCTCCTG GAGAGGAATC AGCAAGAGCA CTTAGAGACG AAATAAACAA TGACCAAAAC
GACGATATCC AAGAAAATGG AGCACCTTCT TTGCCGCCAA GCTTCCAGCC TCTGGAACAA
ACTGCTACTT TGCACAAACA AAAGCAGAAT ACACAAAATA ACAACACTAT TGCAGATGCT
AAAATTTGGT GGGGTCTTTC AACCAAAGTT ATTGCTATCG GGGCTGTTTC GTTACTCCTT
GTAGCTGGAT TAGCTTTGGC ATTACATGGT TTATTTGGCA ATCATGAAAG CACAGATAGC
TTCGGAAACA ACGGCTCATG GGATAGCACT AGTCTAGAAA ATGTTCCGTT TGGCAGCCAA
GGTATTCTTC CTCAAGAAAA ACAACCTGCT AAGAAAAATA TGGGTCGTAA GCAAGTAAAA
CCTGTGCCTA AGCCTAAAAT TCCTACTAAT AACGTTGCTT ACGAAGCTGA TCGTTATCAA
TTCTTAAGCT TCCCGGCTAA TCAAGCTGGA TATGGATACT ATATTCACTT AACCGAACCA
CAAACTGTGT ATCGCTTCGT TGTTTCGATA CGTTCCTCTG GAGGTCACGC ATATTTGTTG
GCAGATACTA AGGATGATCC AACTAAGGGA ACTCAAGTAG CAGAATTTAC ATTCGACGAA
AGCGGAACAA CAGATGTAAA ACTTAAGAAG ATTGTAAAAT CTCAAGATTT CATGCTATGG
GTTCCAAAAG ATAGCATGCC TAAGAACAGT TTGTACATCA ATTCTGTAAA ACTGTACTGA
 
Protein sequence
MEPRLGDIVL NRYVLVSLLR NEAGLQVWQA NDRILTQDCQ LFIVRDSRFL PQVNTIASTL 
ALSHSRKFTQ VLQLRHHDSV AIIVTALDRG ITINDYLALK KAPLSYEAIR TIVAETAQAL
SRLLASNITH HAVSSDTVRI SSSGIELADT PVSPLLEDVT QKDDDQIPRQ NVEHIATKQL
ASLLYTLITR TSSRIQARFD ASLLPDNTPS EFRMICTRSL ASNKNNNVIP MASIAELVAL
LGSYTPLSKL TTRDIVLDGK TSVASISNVR LREAKDDCIL PLPEGLSQSE EEFDAQLMQR
NNQDSNDFSS TNSANTISNN TNGSAKLSDS FKNAGRTLGS LLKRSNTNSD SEGIGNNSFS
DETNTNTDID FHDIAAAEIA SILAPTELDT DDALFPTLSA SYKHFPDTAT SKNIFDHVEN
TRNQTSKNTI SETGVVSSFD FGHLLTENNQ HTELISRPQN LTSEGEATGR VPVVDSHGRF
VAPGEESARA LRDEINNDQN DDIQENGAPS LPPSFQPLEQ TATLHKQKQN TQNNNTIADA
KIWWGLSTKV IAIGAVSLLL VAGLALALHG LFGNHESTDS FGNNGSWDST SLENVPFGSQ
GILPQEKQPA KKNMGRKQVK PVPKPKIPTN NVAYEADRYQ FLSFPANQAG YGYYIHLTEP
QTVYRFVVSI RSSGGHAYLL ADTKDDPTKG TQVAEFTFDE SGTTDVKLKK IVKSQDFMLW
VPKDSMPKNS LYINSVKLY