Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0055 |
Symbol | |
ID | 8709004 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 63765 |
End bp | 65984 |
Gene Length | 2220 bp |
Protein Length | 739 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 646482178 |
Product | hypothetical protein |
Protein accession | YP_003373326 |
Protein GI | 283782572 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACCTC GGTTAGGAGA TATTGTACTA AATCGATACG TACTAGTATC GCTTTTGCGC AACGAAGCAG GCTTGCAAGT ATGGCAAGCC AATGACCGCA TACTTACGCA GGATTGCCAG CTTTTTATTG TACGAGATTC ACGTTTTTTG CCGCAAGTAA ATACAATTGC ATCAACTTTG GCTTTATCGC ATAGCCGCAA GTTTACGCAA GTACTTCAAT TACGGCATCA TGATTCTGTT GCAATTATTG TTACAGCTTT AGATCGCGGT ATTACTATCA ATGATTATTT GGCTCTTAAA AAAGCACCTT TAAGCTACGA AGCAATAAGA ACTATTGTTG CAGAAACTGC ACAAGCTTTA AGCAGATTAC TTGCTAGCAA TATTACTCAC CACGCTGTTT CTAGTGACAC TGTTCGCATA AGTTCTTCAG GAATTGAGTT AGCAGATACT CCAGTAAGTC CTCTTTTGGA AGATGTGACT CAAAAAGATG ATGATCAAAT TCCAAGGCAA AATGTTGAAC ATATTGCAAC TAAGCAACTT GCATCATTGT TATACACTTT GATTACTAGA ACTTCTTCTC GAATACAAGC TCGTTTTGAT GCGTCTCTTT TGCCAGATAA TACTCCTTCA GAATTTAGGA TGATTTGCAC AAGAAGCCTA GCTTCAAATA AAAATAACAA CGTAATACCT ATGGCGTCTA TTGCAGAATT AGTAGCATTA TTAGGTTCAT ACACGCCTTT ATCGAAGCTC ACAACAAGAG ATATTGTGCT TGATGGTAAA ACAAGTGTTG CTTCTATTAG CAATGTTCGA CTTCGCGAAG CAAAAGATGA TTGTATACTA CCTTTGCCTG AAGGTCTTTC ACAAAGTGAA GAAGAATTTG ATGCACAATT AATGCAAAGA AATAATCAGG ATTCTAACGA TTTTTCTTCA ACTAATTCAG CCAACACTAT TTCAAATAAT ACAAATGGAT CCGCTAAGTT AAGTGATAGC TTCAAAAATG CTGGAAGAAC ATTGGGATCT CTTCTTAAAA GAAGCAATAC TAACTCAGAT TCTGAAGGCA TTGGTAACAA TAGTTTTAGT GACGAAACTA ACACTAATAC AGATATAGAT TTTCATGATA TTGCAGCAGC AGAAATAGCT AGCATTCTCG CTCCTACAGA ACTTGATACA GACGATGCTC TTTTCCCAAC ATTGTCTGCT TCATATAAAC ATTTTCCCGA TACTGCTACG TCTAAAAATA TTTTTGATCA CGTTGAAAAT ACAAGAAATC AAACTTCCAA AAATACTATT AGCGAAACAG GCGTAGTTAG TAGTTTTGAT TTTGGGCATC TTCTTACTGA AAATAATCAA CACACAGAAT TAATCTCAAG ACCACAAAAC TTAACTTCAG AAGGCGAAGC TACTGGTCGC GTTCCTGTTG TTGATTCTCA CGGAAGATTT GTAGCTCCTG GAGAGGAATC AGCAAGAGCA CTTAGAGACG AAATAAACAA TGACCAAAAC GACGATATCC AAGAAAATGG AGCACCTTCT TTGCCGCCAA GCTTCCAGCC TCTGGAACAA ACTGCTACTT TGCACAAACA AAAGCAGAAT ACACAAAATA ACAACACTAT TGCAGATGCT AAAATTTGGT GGGGTCTTTC AACCAAAGTT ATTGCTATCG GGGCTGTTTC GTTACTCCTT GTAGCTGGAT TAGCTTTGGC ATTACATGGT TTATTTGGCA ATCATGAAAG CACAGATAGC TTCGGAAACA ACGGCTCATG GGATAGCACT AGTCTAGAAA ATGTTCCGTT TGGCAGCCAA GGTATTCTTC CTCAAGAAAA ACAACCTGCT AAGAAAAATA TGGGTCGTAA GCAAGTAAAA CCTGTGCCTA AGCCTAAAAT TCCTACTAAT AACGTTGCTT ACGAAGCTGA TCGTTATCAA TTCTTAAGCT TCCCGGCTAA TCAAGCTGGA TATGGATACT ATATTCACTT AACCGAACCA CAAACTGTGT ATCGCTTCGT TGTTTCGATA CGTTCCTCTG GAGGTCACGC ATATTTGTTG GCAGATACTA AGGATGATCC AACTAAGGGA ACTCAAGTAG CAGAATTTAC ATTCGACGAA AGCGGAACAA CAGATGTAAA ACTTAAGAAG ATTGTAAAAT CTCAAGATTT CATGCTATGG GTTCCAAAAG ATAGCATGCC TAAGAACAGT TTGTACATCA ATTCTGTAAA ACTGTACTGA
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Protein sequence | MEPRLGDIVL NRYVLVSLLR NEAGLQVWQA NDRILTQDCQ LFIVRDSRFL PQVNTIASTL ALSHSRKFTQ VLQLRHHDSV AIIVTALDRG ITINDYLALK KAPLSYEAIR TIVAETAQAL SRLLASNITH HAVSSDTVRI SSSGIELADT PVSPLLEDVT QKDDDQIPRQ NVEHIATKQL ASLLYTLITR TSSRIQARFD ASLLPDNTPS EFRMICTRSL ASNKNNNVIP MASIAELVAL LGSYTPLSKL TTRDIVLDGK TSVASISNVR LREAKDDCIL PLPEGLSQSE EEFDAQLMQR NNQDSNDFSS TNSANTISNN TNGSAKLSDS FKNAGRTLGS LLKRSNTNSD SEGIGNNSFS DETNTNTDID FHDIAAAEIA SILAPTELDT DDALFPTLSA SYKHFPDTAT SKNIFDHVEN TRNQTSKNTI SETGVVSSFD FGHLLTENNQ HTELISRPQN LTSEGEATGR VPVVDSHGRF VAPGEESARA LRDEINNDQN DDIQENGAPS LPPSFQPLEQ TATLHKQKQN TQNNNTIADA KIWWGLSTKV IAIGAVSLLL VAGLALALHG LFGNHESTDS FGNNGSWDST SLENVPFGSQ GILPQEKQPA KKNMGRKQVK PVPKPKIPTN NVAYEADRYQ FLSFPANQAG YGYYIHLTEP QTVYRFVVSI RSSGGHAYLL ADTKDDPTKG TQVAEFTFDE SGTTDVKLKK IVKSQDFMLW VPKDSMPKNS LYINSVKLY
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