Gene HMPREF0424_0039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0039 
Symbol 
ID8709464 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp44673 
End bp45338 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content35% 
IMG OID646482162 
Producthypothetical protein 
Protein accessionYP_003373310 
Protein GI283782556 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAA ATTTTGAGCC ATCGCAAAAT CCGATGAATA TGAATGAGGA ATCTGCAAGA 
TTTTTGTCTA ATGACACAGA ATTATCTGCA GAAAAAATGG TTCCTTCTAA GGAAGTTAAT
TATTCAAGTG AAGAAAATAA TTTTGATGAA ATATCTGGTA ATTCTTCTTT AGGAAATATT
GTTAAAAATT CATCATCTTC TGGACGTGTT AGTGGTAGTT CCAATACGTA TCGTCGTACA
ATTGGTGGTG CTGCTTCATC TATTTCCAAT AAATCAAATG CAACAAAATC GGGACGTGTT
CCGCGTGCTC GTCGTATGAG TCTTTCTTTA GTAAGAGTAG ATGCATGGTC TGTAGCAAAA
GTAACATTCC TTTTAAGCGT TGCAGGAGGA ATTATTCAAG TTATTGCTGC AGGTTTAGTG
TGGTTGTTCT TGAATATGAT TGGTGTATTT GATCAAGTAA CGCAGATTGT TTCTTCTACT
GGTTTGGATA GTAACGGTTT TAATCTTGCA GATGTGTTCT CACTCCCAAC AGTATTAAGT
ACTGTGACTA TTTTTTCAAT TGTAGAAATA ATTATAATAA CCGTATTATC TGCAATAATT
GCTCTTCTAT ATAACGTTGT TGGTTCATTA GTTGGAGGAA TTCACATTAC TTTAGGTGAC
GACTGA
 
Protein sequence
MSENFEPSQN PMNMNEESAR FLSNDTELSA EKMVPSKEVN YSSEENNFDE ISGNSSLGNI 
VKNSSSSGRV SGSSNTYRRT IGGAASSISN KSNATKSGRV PRARRMSLSL VRVDAWSVAK
VTFLLSVAGG IIQVIAAGLV WLFLNMIGVF DQVTQIVSST GLDSNGFNLA DVFSLPTVLS
TVTIFSIVEI IIITVLSAII ALLYNVVGSL VGGIHITLGD D