Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0039 |
Symbol | |
ID | 8709464 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 44673 |
End bp | 45338 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 646482162 |
Product | hypothetical protein |
Protein accession | YP_003373310 |
Protein GI | 283782556 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAA ATTTTGAGCC ATCGCAAAAT CCGATGAATA TGAATGAGGA ATCTGCAAGA TTTTTGTCTA ATGACACAGA ATTATCTGCA GAAAAAATGG TTCCTTCTAA GGAAGTTAAT TATTCAAGTG AAGAAAATAA TTTTGATGAA ATATCTGGTA ATTCTTCTTT AGGAAATATT GTTAAAAATT CATCATCTTC TGGACGTGTT AGTGGTAGTT CCAATACGTA TCGTCGTACA ATTGGTGGTG CTGCTTCATC TATTTCCAAT AAATCAAATG CAACAAAATC GGGACGTGTT CCGCGTGCTC GTCGTATGAG TCTTTCTTTA GTAAGAGTAG ATGCATGGTC TGTAGCAAAA GTAACATTCC TTTTAAGCGT TGCAGGAGGA ATTATTCAAG TTATTGCTGC AGGTTTAGTG TGGTTGTTCT TGAATATGAT TGGTGTATTT GATCAAGTAA CGCAGATTGT TTCTTCTACT GGTTTGGATA GTAACGGTTT TAATCTTGCA GATGTGTTCT CACTCCCAAC AGTATTAAGT ACTGTGACTA TTTTTTCAAT TGTAGAAATA ATTATAATAA CCGTATTATC TGCAATAATT GCTCTTCTAT ATAACGTTGT TGGTTCATTA GTTGGAGGAA TTCACATTAC TTTAGGTGAC GACTGA
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Protein sequence | MSENFEPSQN PMNMNEESAR FLSNDTELSA EKMVPSKEVN YSSEENNFDE ISGNSSLGNI VKNSSSSGRV SGSSNTYRRT IGGAASSISN KSNATKSGRV PRARRMSLSL VRVDAWSVAK VTFLLSVAGG IIQVIAAGLV WLFLNMIGVF DQVTQIVSST GLDSNGFNLA DVFSLPTVLS TVTIFSIVEI IIITVLSAII ALLYNVVGSL VGGIHITLGD D
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