Gene HMPREF0424_0037 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0037 
Symbol 
ID8709990 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp43416 
End bp44153 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content33% 
IMG OID646482160 
ProductPAP2 family protein 
Protein accessionYP_003373308 
Protein GI283782554 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCAGA AAAATAACAG TAATCACAGC GGATTATCGG TTTTCACTAG AAATTCCGCT 
ACTATTTTTA CACTATTACT CGCAGTTGTT ATTCCGTTCT TAGGAAAAGC ACTATTAGTT 
ACGAGTAAAG AGCGCACTTA TGAATCATCC ATAGTCTCCT GGTTCCACAA GAGTGTTCCC 
TCTGTAATTC TCAGTATTTC AAAAATATTA GCTTTAGTTT TTTCAACTAA GGGTTGCATA 
GCAATACTCG TTTTATTAGC AGTTCTTTCA TTATTTGTAA ATAAAAATTG GAAGATGACA 
ATAATTCAAC TTTTAATTTC GCTTCTTCCT ATGATTTACA TTTTTGCAGT TAAATTTGCT 
GTAAATCGTC CGCGTCCCCA CATTGGTTTG AATATTAAAT TACCAACTGA TCCAAGTTTC 
CCAAGTGGAC ACACTTCAGC AGCTGTAGCA GTTTGCGTTA TGGCAATGTT GATTCTTTAC 
ATCAATAAAC CATCATCAAT TCAATTTGGA TTACTTTTTA GCGCAATTCT TGTTGTTATA 
GTTGCTGTTT CACGTATTAT TGTCGCTGCT CATTTCCCTA CGGATGTATT AGCTGCAGCA 
ATTATATATC CACTACTTTC TGTTACAATT TTGCGCTCGT TCCAGCGACA TAATTTATAT 
ATTGACAACA GAAATAATGA CAAATCTACT TACGAAGAAC AAATATTAGA TTTTAACTCA 
CAATCTAATA TTCAATAA
 
Protein sequence
MMQKNNSNHS GLSVFTRNSA TIFTLLLAVV IPFLGKALLV TSKERTYESS IVSWFHKSVP 
SVILSISKIL ALVFSTKGCI AILVLLAVLS LFVNKNWKMT IIQLLISLLP MIYIFAVKFA 
VNRPRPHIGL NIKLPTDPSF PSGHTSAAVA VCVMAMLILY INKPSSIQFG LLFSAILVVI 
VAVSRIIVAA HFPTDVLAAA IIYPLLSVTI LRSFQRHNLY IDNRNNDKST YEEQILDFNS 
QSNIQ