Gene HMPREF0424_0036 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0036 
Symbol 
ID8709127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp42559 
End bp43260 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content41% 
IMG OID646482159 
ProductFHA domain protein 
Protein accessionYP_003373307 
Protein GI283782553 
COG category[T] Signal transduction mechanisms 
COG ID[COG1716] FOG: FHA domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGTGT TTGACCGATT TGAGAAGAGC GTGGAAGGTG CAATGAACAG CGTCTTCGCA 
AAATTCGGCT CCAAAGATTT GCAGCCAGTC GATTTTTCGA GTGCTTTGGA ACGTGAAATT 
GACGCTGAAG CCATGCCTAT TGGCAGAGAT CACACAGTTG CTCCAAATGA GTACCGTTTT 
AAGCTGAGTA CGCCTGATTT TGATCATATT GAACAATGGG GTAGTGAAGC ATTAGCTAAT 
GAGCTTGCAG ATAATCTTAC TCAATATGCT AAGAGTCAGC ATTATGCTTT CGTAGGACCT 
GTAGTTGTTA TTTTTGAAGA GGATTTGGAA TTAACTAAAG GTAATTTCCA TTTGACATCT 
GAATCTGTTC AGGGTAATGC TGTTCCTGTT ACTACTGAGG ATCAATCGCA GAATCACCCG 
ATGCTTGAAA TTAATGGTAA CCAGTACTTG CTTACAAAGG ATCGTACTAT TTTAGGACGT 
GGGTCTGGTT GCGATATTGT AATAGATGAT CCAGGTATTT CTCGTCATCA TCTTGGTATT 
GATATAACTC CTGACGGTGT TATTGCTCGT GATCTTGGAT CTACGAATGG TACATATGTA 
GAAGGTCATC AGGTTCCTGC AGCAACATTG GTTGATGGCA ACACTATTAC TATTGGTCGT 
ACGCGTATTC TTTATTGGGC ATCGTCTCAA GACCAGGAGT AA
 
Protein sequence
MSVFDRFEKS VEGAMNSVFA KFGSKDLQPV DFSSALEREI DAEAMPIGRD HTVAPNEYRF 
KLSTPDFDHI EQWGSEALAN ELADNLTQYA KSQHYAFVGP VVVIFEEDLE LTKGNFHLTS 
ESVQGNAVPV TTEDQSQNHP MLEINGNQYL LTKDRTILGR GSGCDIVIDD PGISRHHLGI 
DITPDGVIAR DLGSTNGTYV EGHQVPAATL VDGNTITIGR TRILYWASSQ DQE