Gene HMPREF0424_0035 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0035 
Symbol 
ID8708951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp41989 
End bp42525 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content38% 
IMG OID646482158 
ProductFHA domain protein 
Protein accessionYP_003373306 
Protein GI283782552 
COG category[T] Signal transduction mechanisms 
COG ID[COG1716] FOG: FHA domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGTTTA CTGAATTAAC GTTTGCAATA CTTAAGTATG GCTTTTTAGT CTTACTTTGG 
ATTTTTGTAT GGTGCGCTAT CCGTTCGCTT CGCTGCGATA TTGAAGTATT TAGTCCTAAA 
AAATCTCGTT TTTGGAAGAA AAGTTCTCGT CGTAATTCTC GTGAAGCAAA GTTTTCACAA 
GTTATGCAAG TGCGTGAGAC GCCAGTATTT GCCAAAGCAG AAAATCAAGA AAATACATCC 
GGTTCTCCAA CTTTGTTAGT TGTTATTGAT GGACCTTTGG CAGGATCTTC ATTCCCATTG 
AACGCTGCTG GTGTGACTCT TGGTCGTGCT GCTTCTAATA CAGTCGTATT AAATGATGAA 
TTTGTATCTT CACACCATGC TCGTGTTTAT TTTAATCAAT CAGTTAATTC TTGGGTTCTT 
GAAGATTTAG GTAGCACAAA TGGAACCATG ATTGGTCATA ATCGTGTTAA TGAGCCTGTT 
ATATTAGCTC CGCGTACTTC TGTGCGAATC GGCGCAACAA TGTTTGAATT GAGGTAA
 
Protein sequence
MMFTELTFAI LKYGFLVLLW IFVWCAIRSL RCDIEVFSPK KSRFWKKSSR RNSREAKFSQ 
VMQVRETPVF AKAENQENTS GSPTLLVVID GPLAGSSFPL NAAGVTLGRA ASNTVVLNDE 
FVSSHHARVY FNQSVNSWVL EDLGSTNGTM IGHNRVNEPV ILAPRTSVRI GATMFELR