| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0032 |
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| Symbol | |
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| ID | 8709310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 37384 |
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| End bp | 38850 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482155 |
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| Product | penicillin-binding protein, transpeptidase domain protein |
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| Protein accession | YP_003373303 |
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| Protein GI | 283782549 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAA GTCTTAGAGA ACTTTTTACT GCAGTATTGG TACTTTTTGT AATACTTGGT
ATTTCAAGTA CAATTATTAC TTCTATTAAA GCGAATGCTC TAAATTCTGA TCCTCGAAAT
CGCAGAGCTT TATACCATGA GTTTGGCGCT CCACGTGGAG CAATACTTAC ATCAGATGGC
ACAGTTATAG TGAAATCTGA ACCATCTAAA GATGCTTTTG TGTATCAACG TCAGTATTCT
AACGGATTAG TATATGCTCC AGTTACTGGA TATTTTTCTA TTAGCCAGCG TGCAGATAGA
GGAATTGAAG CTTCTCGTAA TAGTTTATTA AGTGGAGAAT CAGATGCTCT GTTCTGGCAA
AGATTCCGTT CATTATTTAC TGGAGCAACT AATCGCGGAG CTTCTATAGA AACATCAATT
GATTCACGTT TGCAAAATCT TGCTTACAAT CTTCTTAAAG GCAAAGACGC AGCTTTAGTT
GCAATTGAGC CAAAAACCGG AAGAATTCGC GCCATGGTAA GCACTCCAAG TTATGATCCG
AATGATCTTG CTCTTCACAA TATTAATGAA GTAAATAAAT CGTATGAGAG AATAACATCA
GATGTGTCAA ATCCTATGCT GAATCGTGCT GTTTCTGAGC TTTATGCTCC TGGCTCTACG
TTCAAAACTG TTGTTGCAGC AGCAGCATTA GAATCTGGAA AATACAAGCC TGATACGAAA
ATACCTGCTG GTGCGAGCTA TGTTTTGCCT GGAACCAAGA CGTCTCTTAC AAATGTCACT
TACCAAGCGA ATGGCGTTGA TGGAAAAATA TCTTTTGAGG ATGCTTTAGC ATATTCGTCT
AATACTGCTT TTGCTCAATT GGGTAATTCT TTAGGATCTG ACGTAATTGT AAAGCAGGCA
AGAAAGTTTG GATTCTTCGA TTCGCTGCCT ATTGATGGTT CTGATTCTAC TGGATTCCCA
ATACGATCCG TGAAATCTAC TTTTTCTATT AAGCCAACTC CAGATAGACT AGCTCTGGAA
TCAATAGGTC AAGGTGATGC TAAGGTTACA CCTTTGCAAA ACGCTATGAT TGCGGCAGCT
ATTGCAAATA ATGGAACATT GATGAAGCCT ACTCTTGTTG ATTGTGTAAG ATCTAGCGAT
TTGTCAGTAT TGTCACAAAC TAGACCAACC GTTATGAACC AAGTAATGAG TAGTGACAGT
GCATCTAAAT TAACTTCTAT GATGCAGGCT GTTGTTACAA AAGAAAATCC TAATCTTGCT
TTACCTAATA TTCATGTTGC GGCTAAAACA GGTACTGCAC AGATTGGAAT GTATAATCAA
GCTGCTAATG GTTGGGTTAT TGGATTTGCT CCTGCTGAAA ATCCTAGAAT AGCTATAGCG
GTTATAGTAC ATAACACAAG TACATTTGGT AGTTACGCGG CAGGACCTAT TATGCGACAA
GTGATGGAGG AGGCGCTTAA ACAATGA
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| Protein sequence | MNKSLRELFT AVLVLFVILG ISSTIITSIK ANALNSDPRN RRALYHEFGA PRGAILTSDG
TVIVKSEPSK DAFVYQRQYS NGLVYAPVTG YFSISQRADR GIEASRNSLL SGESDALFWQ
RFRSLFTGAT NRGASIETSI DSRLQNLAYN LLKGKDAALV AIEPKTGRIR AMVSTPSYDP
NDLALHNINE VNKSYERITS DVSNPMLNRA VSELYAPGST FKTVVAAAAL ESGKYKPDTK
IPAGASYVLP GTKTSLTNVT YQANGVDGKI SFEDALAYSS NTAFAQLGNS LGSDVIVKQA
RKFGFFDSLP IDGSDSTGFP IRSVKSTFSI KPTPDRLALE SIGQGDAKVT PLQNAMIAAA
IANNGTLMKP TLVDCVRSSD LSVLSQTRPT VMNQVMSSDS ASKLTSMMQA VVTKENPNLA
LPNIHVAAKT GTAQIGMYNQ AANGWVIGFA PAENPRIAIA VIVHNTSTFG SYAAGPIMRQ
VMEEALKQ
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