Gene HMPREF0424_0030 details

Gene Information

• Locus tag: HMPREF0424_0030
• ID: 8709487
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: -
• Start bp: 34425
• End bp: 36428
• Gene Length: 2004 bp
• Protein Length: 667 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 646482153
• Product: kinase domain protein
• Protein accession: YP_003373301
• Protein GI: 283782547
• COG category: [K] Transcription; [L] Replication, recombination and repair; [R] General function prediction only; [T] Signal transduction mechanisms
• COG ID: [COG0515] Serine/threonine protein kinase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAATACCA CAATGCCCAC CTTATTAGCG AATGGTCGAT ACGAATTAGG GGAGCTTATT 
GGCCGCGGCG GCATGGCGGA AGTGCGTGTT GCTGTTGATA AGCGCTTAGG TCGTACAGTT 
GCTGTGAAAA TCATGCGTTC TGATTTAGCG AACGATGAGA TTTTCCTTTC GCGATTCCGC 
AGGGAAGCGC ATGCCATTGC GCAGATGAAC AATCCTAATA TTGTGAATAT TTATGATTCT 
GGAGAAGAAT CTGTTATAGC AGAAAATGGC TTAGAAGAGC GTTTACCGTA TCTTGTAATG 
GAATACATTA AAGGTAAAAC ATTACGCGAT ATTCTAAAAA TGAATGGAGC TTTAAGTCAG 
AGAGACGCTG AACAAGTTAT GCTTGGCGTG CTCAATGCTT TAGAGTACTC ACACAGAATG 
GGTATTATTC ACCGCGATAT TAAGCCTGGA AATATTATGA TTTCCGAGCA GGGCATGGTG 
AAGGTAATGG ACTTCGGCAT TGCTCGTGCT CTTGACGATT CTGCAACAAC TATGACACAG 
TCTCAAGGTG TTGTTGGAAC AGCACAATAT TTGTCTCCAG AGCAGGCTCG TGGTGAACAA 
GTAGATATGC GCTCTGATTT GTATTCTGCA GGGTGTGTGC TGTATGAAAT GCTAACTGGA 
CGTCCTCCTT TTATTGGAGA TTCAGCTGTT GCCATCGCAT ATCAGCATGT TTCAGAAGTG 
GCGACACCTC TTAGCACACT TGTTCCAGGC ATGCCTGCTA TGTGGGACAA GATTTGTGCT 
AAAGCAATGG CAAAAGATAG ACAAAATAGA TATGCCACAG CATCAGAGTT TAAGAATGAC 
ATTCTAGCGT TTATGAACGG CGGAGTGCCT GTTGCAGCAG CGTTTAATCC ATTGACTGAT 
TTAGCTAATA TGAAGGCGCG TAAGCAGGCT GAACAGGATG CTGCAACTAT GGCTATGGGC 
ATGACAGATG GTGCTGCAAC TCAATCGTTT AATCCTATTA CTGGTCAAGT TGAATCTGCA 
AATATTGCAT TTTCTCCTAG CACGCGCGCG TCACAAAGAG CAACAATGCA AGCGCAACGT 
CGTAAACGAG TAGTAATCGG ATCTATAGTT GGAGTATTAG TAACAGTATT AGTTCTTCTG 
GGTGTGCTGT TTATGCTCAA TCGAAGTCGT GCTACTGGAG ATGTTGTAGT TCCAACATTT 
ATGGAGACAA CAACGCAGGA TGCTGCTCGT GAAAAGTTGC GTGCACTTGG TTTGGTTCCA 
GATATTCGTG AAGATGATCA TTCTTCTCAA CCTGAGGGAA CTTTTACTAA GCAATCACCG 
CGTGGAGGTG AGCATGTTGC TTCTGGATCC AAGGTGACTG TATGGTTCTC GGTTGGACCA 
CAATCAACTC GCGTGCCAGA TGTAAGTGGT AAAACGCAAG AAGCTGCTCG TAAAATGCTT 
GAGCGTGCTG GGTTTAAGAT TGCTAATGTT CGAGTAGAAG ATAGTGCAGA TATTAAGAAA 
GATCATGTAA CTCGCACAGA TCCTGACGCA GATTCGTTTG CTGATAAGGG TACGTTAATT 
ACTTTATATA TTGCATCCGG TTTAACTAAA ATTCCTGACG GTCTTGTTGG TCAAAGCAAA 
GACATTGTGG TTAGCCAATT AGAGAATTTT GGTTTTACTA CGGATGTAGT TAAGGAAGAT 
TCAGATAATG TGCCTGAAGG TTCTGTAACT CGACTAAATC CGTCGTCTGG TTCCTCTGTT 
AAACCACACA GCTCTATTAC TGTGTATGTT TCTCAAGGTG CTTCGAAAGT TGAAGTTCCT 
AGTATAGATC TTGGTACTGT TACCTTCAAA CAGGCGAAGA AAATACTTGA AGCAAAAGGT 
TTGAGAGTAG TATCTGATTC AATGGCAAAA GATGACGATA TAGTCATGAG CATGTCTGAG 
GAAGCAGGAA GCAAGGTTGA GAAGGGCAAA GCGATTACAT TAGTTACACG TCCAAGCCTT 
GGTTCTTCAT CTGATTCAGA CTGA 

 

Protein sequence

MNTTMPTLLA NGRYELGELI GRGGMAEVRV AVDKRLGRTV AVKIMRSDLA NDEIFLSRFR 
REAHAIAQMN NPNIVNIYDS GEESVIAENG LEERLPYLVM EYIKGKTLRD ILKMNGALSQ 
RDAEQVMLGV LNALEYSHRM GIIHRDIKPG NIMISEQGMV KVMDFGIARA LDDSATTMTQ 
SQGVVGTAQY LSPEQARGEQ VDMRSDLYSA GCVLYEMLTG RPPFIGDSAV AIAYQHVSEV 
ATPLSTLVPG MPAMWDKICA KAMAKDRQNR YATASEFKND ILAFMNGGVP VAAAFNPLTD 
LANMKARKQA EQDAATMAMG MTDGAATQSF NPITGQVESA NIAFSPSTRA SQRATMQAQR 
RKRVVIGSIV GVLVTVLVLL GVLFMLNRSR ATGDVVVPTF METTTQDAAR EKLRALGLVP 
DIREDDHSSQ PEGTFTKQSP RGGEHVASGS KVTVWFSVGP QSTRVPDVSG KTQEAARKML 
ERAGFKIANV RVEDSADIKK DHVTRTDPDA DSFADKGTLI TLYIASGLTK IPDGLVGQSK 
DIVVSQLENF GFTTDVVKED SDNVPEGSVT RLNPSSGSSV KPHSSITVYV SQGASKVEVP 
SIDLGTVTFK QAKKILEAKG LRVVSDSMAK DDDIVMSMSE EAGSKVEKGK AITLVTRPSL 
GSSSDSD