Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0028 |
Symbol | |
ID | 8709692 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 32115 |
End bp | 32870 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 646482151 |
Product | hypothetical protein |
Protein accession | YP_003373299 |
Protein GI | 283782545 |
COG category | [S] Function unknown |
COG ID | [COG3879] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAAGA GAACTGGGAA ACATCGTGCT CAACACTCGC TGTTAAGCAG TTTTGCTGTT GCCGTTGCAG TATTTCTTAC CGGCTATTTA TTCGTTCTTA ACTTGCGCGT AAACCGCTCT GCTTTTGTGA CTTCTAATAC GAGTCAAATG GTTGAAAGAA ATTCACAGCG CACAAAAAAT TTACGAGAAG ATATAAAATC TTTAGATTCT AAAATTAATT TACTTAATAA AACGCTTGGT AGCAGCACTA GTGAAGGAAA AGAATCTTCT GATACTGGAA GTAGTACCGT ACTTCCAAAA CTTGAAGGAC CTGGAATTGT TGTAACTCTT AACGACTCTC CTCTATGGAA AGGCGCAGTT AATGGTTCCG GAACATCCGG AACCATTAAT GATTACGTAA TCCACCAGCA AGATATTGAA GCTGTAGTAA ATGCTTTGTG GCGCGGCGGA GCAGAAGCAA TAACTATTCA GGATCAGCGA GTATTATTTA ACTCCGCAGT TGTTTGTATT GGTAACGTTC TTATGTTGCA AGGTCATCAG TACTCGCCAC CGTATAAAAT ATCTGCTATT GGTCCAATGG ATAGCATGGT TGATGCTCTA AACAATTCAC CAGCCATACA CACCTACAAG GAGTATGTAA GTTCGTTTGG ATTAGGATGG AAAGTGGAGA AAAAGAATAA TCTGCGATTC CCTGAAGCAT CGGCTTTGTT GCAACCATTA AGGTACGCAA CAGTTCCTAA AGTGCTAAAC AAATAA
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Protein sequence | MAKRTGKHRA QHSLLSSFAV AVAVFLTGYL FVLNLRVNRS AFVTSNTSQM VERNSQRTKN LREDIKSLDS KINLLNKTLG SSTSEGKESS DTGSSTVLPK LEGPGIVVTL NDSPLWKGAV NGSGTSGTIN DYVIHQQDIE AVVNALWRGG AEAITIQDQR VLFNSAVVCI GNVLMLQGHQ YSPPYKISAI GPMDSMVDAL NNSPAIHTYK EYVSSFGLGW KVEKKNNLRF PEASALLQPL RYATVPKVLN K
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