Gene HMPREF0424_0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0028 
Symbol 
ID8709692 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp32115 
End bp32870 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content40% 
IMG OID646482151 
Producthypothetical protein 
Protein accessionYP_003373299 
Protein GI283782545 
COG category[S] Function unknown 
COG ID[COG3879] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAAGA GAACTGGGAA ACATCGTGCT CAACACTCGC TGTTAAGCAG TTTTGCTGTT 
GCCGTTGCAG TATTTCTTAC CGGCTATTTA TTCGTTCTTA ACTTGCGCGT AAACCGCTCT
GCTTTTGTGA CTTCTAATAC GAGTCAAATG GTTGAAAGAA ATTCACAGCG CACAAAAAAT
TTACGAGAAG ATATAAAATC TTTAGATTCT AAAATTAATT TACTTAATAA AACGCTTGGT
AGCAGCACTA GTGAAGGAAA AGAATCTTCT GATACTGGAA GTAGTACCGT ACTTCCAAAA
CTTGAAGGAC CTGGAATTGT TGTAACTCTT AACGACTCTC CTCTATGGAA AGGCGCAGTT
AATGGTTCCG GAACATCCGG AACCATTAAT GATTACGTAA TCCACCAGCA AGATATTGAA
GCTGTAGTAA ATGCTTTGTG GCGCGGCGGA GCAGAAGCAA TAACTATTCA GGATCAGCGA
GTATTATTTA ACTCCGCAGT TGTTTGTATT GGTAACGTTC TTATGTTGCA AGGTCATCAG
TACTCGCCAC CGTATAAAAT ATCTGCTATT GGTCCAATGG ATAGCATGGT TGATGCTCTA
AACAATTCAC CAGCCATACA CACCTACAAG GAGTATGTAA GTTCGTTTGG ATTAGGATGG
AAAGTGGAGA AAAAGAATAA TCTGCGATTC CCTGAAGCAT CGGCTTTGTT GCAACCATTA
AGGTACGCAA CAGTTCCTAA AGTGCTAAAC AAATAA
 
Protein sequence
MAKRTGKHRA QHSLLSSFAV AVAVFLTGYL FVLNLRVNRS AFVTSNTSQM VERNSQRTKN 
LREDIKSLDS KINLLNKTLG SSTSEGKESS DTGSSTVLPK LEGPGIVVTL NDSPLWKGAV
NGSGTSGTIN DYVIHQQDIE AVVNALWRGG AEAITIQDQR VLFNSAVVCI GNVLMLQGHQ
YSPPYKISAI GPMDSMVDAL NNSPAIHTYK EYVSSFGLGW KVEKKNNLRF PEASALLQPL
RYATVPKVLN K