Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0023 |
Symbol | glgP |
ID | 8709619 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 26255 |
End bp | 28744 |
Gene Length | 2490 bp |
Protein Length | 829 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 646482146 |
Product | phosphorylase, glycogen/starch/alpha-glucan family |
Protein accession | YP_003373294 |
Protein GI | 283782540 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0058] Glucan phosphorylase |
TIGRFAM ID | [TIGR02093] glycogen/starch/alpha-glucan phosphorylases |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.785291 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTAAAC ACGTCGCGCC GAAAGCCAAA ACTACTGCGA CGGCATTTGC CAAAGAACTT CAAGAGCACC TCAAGTACAC CCAGGGTGTA ACGCCAGAGC AGGCCACTAC GGCAGATGTG TATGTTGCCG CTGCTACCGC AGTTCGTCGT CACTTGATGG ACTCTTGGAT GCAGACTCAG CATGACATGG TTAATGGCAA CACCAAGGCT GTGGGCTATT TGAGCGCAGA GTTCTTGATG GGTAAGCAGC TTGAGAACGC TTTGTTGAAC GCTGGTCTTA CTGACCAATT CAATAAGGCT GTTACTAAGC TTGGCTTCGA TCCAAAAGCT GTTATCGATG CCGAGTATGA ACCAGGTTTA GGTAACGGCG GTTTGGGTCG TCTCGCAGCC TGCTTCATCG ATTCACTCGC CTCTATTGGC GTTCCAGCAT TTGGCTACGG CATCCAGTAT CGTTACGGCA TCTTCAAGCA GCGCTTTGAT GAAGAAGGTA AGCAGGTTGA AACCCCTGAT TACTGGCTTA GCAACGAAGA GCCATGGGGT CACATTGATT ATGGTCGTGA CCAGCGCGTC AACTTCGGTG GTGAAGTTGT AGAGGAAAAC GGCAAGCGCG TTTGGAAGCC AGCTTGGTCT GTTCGCGCAG TACCAGTTGA CTACATGGTT CCAGGTTATA ATTCTGGTCG CGTAAATACT CTTCGTTTGT GGACCGCTAA GTCTTACGAT GAGTTTGATT TGCTCACCTT CAACAAGTCC GAGTACTTGG ATGCTGTAAA GCCACAGGTT GCAGCAGAAA ACATTTCTAA GATTCTTTAC CCAGAAGATT CCACTCCAGA AGGTAAGGCT TTGCGTCTTG AGCAGCAGTA CTTCTTCGTA GCTGCTTCTA TTCATGATGC AATCCGCGTA TTCTACCCAG GTCAGGATAA GCCGGATCTC ACTACCTTCC CAAGCAAGAT TAACTTCCAG TTGAACGACA CTCACCCAGT TATCGGCATT CCAGAGCTTA TGCGCGTTCT TATGGACGAG TACGGCTACG ATTGGAACAC CGCTTGGGGT ATCACCACCA AGACCTTCAA CTACACTTGC CACACCTTGC TTCCAGAAGC TTTGGAAGTT TGGCCAGCCA AGCTTATTGG CGAACTGTTG CCACGCCACC TTGAAATCAT TCAGGGCATT AGCGAGCAGT TCCGCAACGA GCTTCGCGGT AAGGGCGTTG CTGAGGATCA GGTTGAGCGC ATGCGCATCG CTACCGACGC TGACGAAAAT GGCGAAGGTG CTGTAGTTCG CATGGCTTAC TTGGCTACCT ACGGCGGTTC TTACGTTAAC GGTGTTGCTG AACTTCACTC TGAGTTGTTG AAGGATGTCA CTTTGAAGGA CTTCTCCAGC GTTTACCCAG ATAAGTTCAA GAACGTTACT AACGGCGTAA CTCCTCGTCG TTTCGTGCGC TTGAGCAACC CACGCATGTC TGCTCTTATT ACTGAGGGCT TGGGCACAGA CGCATGGCAG GGTAATTTGG AGCTTCTCGA AGGCTTGAAG CCATTGGCTG ACGACAAGGC GTTCGTTAAG AAGTTTGCTG AAGTTAAGAA GCAGAACAAG CTTGCCTTCG TTGATTTCGC AAAGCAGAAG TATGGCTTTG AGATCAACCC AGACACAATG TTCAACACCA TTGTTAAGCG TTTGCACGAG TACAAGCGCC AGTCCATGAA GATCCTCCAG GTTATCTCCA CATACGCTGG AATCAAGAAT GGCACAATCG ACGTAGACAA GATGCTTCCA CGCACCGTGT TCTTCGGCGC TAAGTCTGCT CCAGGCTATG CTATGGCAAA GCTTACGATT CAGCTCATCA ACAATGTTGC TCGCGTTGTG AACAACGACC CAGCTTGCAA GGGCAAGCTC GCAGTGTTCT TCCCACCAAA CTACAACATT GAACTTGCTA TGAACTTGAT TCCTGCAACC GATTTGGATG AGCAGATTTC TCAAGCTGGT AAGGAAGCTT CTGGCACTGG TAACATGAAG TTCGCTTTGA ACGGTGCTTT GACTGTTGGT ACTCTCGATG GTGCAAATGT TGAGATTCGC GAGCGCGTTG GTGCTGAGAA CTTCTTCCTC TTCGGCATGA CCGTTGACGA GGTTGAGAAG CTCTACGCTG AAGGCTATGA TCACGGCGGC TCCCGTAAGT ACTATGAATC TGATCCTCGC TTGAAGACTG CTGTGGATAT GGTTGCTGAC GGCACCTTCT CCAACGGCGA CAAGAGCGTG TATGAGCCAC TCGTTAACGA TTGGCTTACC CATGATTACT TCATGGCAAT GGCTGACTTC AGCTCTTATA TGGATATTCA GGCTCAGATT GAGGAAACTT ACCGCGATCC AATGAAGTGG GCTCGCATGG CAGTCTTGAA CGTAGCCAAC TCTGGTTACT TCTCTTCTGA CCGCTCTATC GAAGATTACC TCGATCGCAT TTGGCACACG GGTGCTCTTC CAACACCTGT TGCTGAGTAA
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Protein sequence | MTKHVAPKAK TTATAFAKEL QEHLKYTQGV TPEQATTADV YVAAATAVRR HLMDSWMQTQ HDMVNGNTKA VGYLSAEFLM GKQLENALLN AGLTDQFNKA VTKLGFDPKA VIDAEYEPGL GNGGLGRLAA CFIDSLASIG VPAFGYGIQY RYGIFKQRFD EEGKQVETPD YWLSNEEPWG HIDYGRDQRV NFGGEVVEEN GKRVWKPAWS VRAVPVDYMV PGYNSGRVNT LRLWTAKSYD EFDLLTFNKS EYLDAVKPQV AAENISKILY PEDSTPEGKA LRLEQQYFFV AASIHDAIRV FYPGQDKPDL TTFPSKINFQ LNDTHPVIGI PELMRVLMDE YGYDWNTAWG ITTKTFNYTC HTLLPEALEV WPAKLIGELL PRHLEIIQGI SEQFRNELRG KGVAEDQVER MRIATDADEN GEGAVVRMAY LATYGGSYVN GVAELHSELL KDVTLKDFSS VYPDKFKNVT NGVTPRRFVR LSNPRMSALI TEGLGTDAWQ GNLELLEGLK PLADDKAFVK KFAEVKKQNK LAFVDFAKQK YGFEINPDTM FNTIVKRLHE YKRQSMKILQ VISTYAGIKN GTIDVDKMLP RTVFFGAKSA PGYAMAKLTI QLINNVARVV NNDPACKGKL AVFFPPNYNI ELAMNLIPAT DLDEQISQAG KEASGTGNMK FALNGALTVG TLDGANVEIR ERVGAENFFL FGMTVDEVEK LYAEGYDHGG SRKYYESDPR LKTAVDMVAD GTFSNGDKSV YEPLVNDWLT HDYFMAMADF SSYMDIQAQI EETYRDPMKW ARMAVLNVAN SGYFSSDRSI EDYLDRIWHT GALPTPVAE
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