| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0019 |
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| Symbol | |
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| ID | 8709439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 22047 |
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| End bp | 23768 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482142 |
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| Product | hypothetical protein |
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| Protein accession | YP_003373290 |
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| Protein GI | 283782536 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2966] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0694356 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTACAG CAGAGAATAA TATTGAGAAT AATGAATACG ACAACAGCAT CAACAACTGC
GATTGCGATA AGCCTGAAAT TCTTTCGACT GGTCATATAG TCGGAAAACC TTCTGGGCGT
TTTCATACTC ATGCTATTCC ACTCGATATG GACGATGTTG AGCGAGATTG GGATAAGCCA
GTTACACAAG CAGGAATTGC TGCAAAATCG AGTATTATTA TTCGCGTCGG TGCACTCGGC
TTAGGAGCAG GCACAGGAAG CTACCGAGTT CGCGAGCTTA TGCACAGAAT CGGCGAACCG
ATGGGCGTAC ACGTGCGTGC AGACGTGAAT CTCACAGATA TTGAGGCAAC TTGCACTGAT
AAGCATGAGC GAATTACTGA GGTTGTAGAT CTTCCAACCA CAGGTGTTAA CACTGAGCGT
ATTTGGCTTC TAGAACATTT TGCAGATTGG TTTAACGTCA AGCTTGGAAA CAATTCTTTA
TATCACTCTA AAGCTGCTGT TTCTAAGGAA TTAGTTGACA CATTGCAAGC GAGTGACGAC
GAACATACCA TTGTACAAAC AGCTAAGCAG TCTGAAGAAA ATGCTACTAA AATTGCAAAA
AAGAAAGCGT TGCAAGAAGC TATAAAAAAA GAAAAACCAC GCGGCATTTT TGCATTACAG
CCAGAAAGTG CTTATGCTGA ACATTTTTCA CACGTAAACA CATCCAGTAG TAATGGCGAG
CCTAAAAATA ATCATCCTCT TACGGTTAGA GAAGTACATG ACCGTCTTGA TTTGATTAAA
AATAGGAAAC CACTATACAA ACCGTGGTTT GCTGGTCTTG CTTCGGCAGT TGCTTGCGCA
TCCTTTGCGT TCTTGCTTGG CGGCGGCATT TACGACATGA TTGGTGCTTT TATTGGAGCA
GGAATCGGTC ACTATATTCG TCGCAGAATG TTTATGAAGC ATCTAAACCA GTTTGTAGTT
ACATTCGTAG CTGTTGCAAT AGGTGCACTA TCATGCATTG GGGCTTTGCG TCTTATTGGC
TTCTTTGACC CTAGCGCACT CAATCACACA ACTGCATATA TTGGCTCAGT GTTGTTTGTT
ATTCCTGGAT TCCCTCTTAT TACAGGCGGT TTAGATATTG CAAAAATTGA TTTCCCTTCA
GGAATTCAAC GACTTTGTTA CACAATGGCT ATTATTTTGA TGGGAACTCT TGCGGGATGG
ACAGTTGCAA GCCTTGTACA TCTCAATCCT CAAGGCTTCC CTCCTCTCGG ATTAAATCCT
TGGCTTAACG CAGTTCTTCG ACTTATTACA GCTTTTGCCG GAGTATGGGG CTTCTCAGTT
CTATTTAATT CTCCACAACG AATGTGCTTA GTTGCTGGCG TTATTGGCGC TATTACTGAC
ACATTGCGTT TAACTATGAC AGATTTTGGA GTTGCTGCCG AAATTGCAGC TTTCAGCGGT
GCTTTATTGG CAGGTTTGCT AGCTTCTGCT TGGAGAACTA TCGTTCGTCA CGGATTAGCG
CCTCAATATT TGGGTTATCC ACGAATAGGT CTTACGGTTC CATCTATCGT AATTATGGTT
CCTGGACTTT ATATGTATCG CGCAATGTTT TATCTTGGTC AATTTCACAC GCTTCCAGCG
TTAGACTGGA CTTTCCGCGC TTTCATGGTA ATTATTTGCT TACCTATTGG TCTTGCTGTA
GCACGCGTTA TTACAGATAA AAGCTGGCGT TACGACGTGT GA
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| Protein sequence | MSTAENNIEN NEYDNSINNC DCDKPEILST GHIVGKPSGR FHTHAIPLDM DDVERDWDKP
VTQAGIAAKS SIIIRVGALG LGAGTGSYRV RELMHRIGEP MGVHVRADVN LTDIEATCTD
KHERITEVVD LPTTGVNTER IWLLEHFADW FNVKLGNNSL YHSKAAVSKE LVDTLQASDD
EHTIVQTAKQ SEENATKIAK KKALQEAIKK EKPRGIFALQ PESAYAEHFS HVNTSSSNGE
PKNNHPLTVR EVHDRLDLIK NRKPLYKPWF AGLASAVACA SFAFLLGGGI YDMIGAFIGA
GIGHYIRRRM FMKHLNQFVV TFVAVAIGAL SCIGALRLIG FFDPSALNHT TAYIGSVLFV
IPGFPLITGG LDIAKIDFPS GIQRLCYTMA IILMGTLAGW TVASLVHLNP QGFPPLGLNP
WLNAVLRLIT AFAGVWGFSV LFNSPQRMCL VAGVIGAITD TLRLTMTDFG VAAEIAAFSG
ALLAGLLASA WRTIVRHGLA PQYLGYPRIG LTVPSIVIMV PGLYMYRAMF YLGQFHTLPA
LDWTFRAFMV IICLPIGLAV ARVITDKSWR YDV
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