Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0018 |
Symbol | ppc |
ID | 8709370 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 19084 |
End bp | 21840 |
Gene Length | 2757 bp |
Protein Length | 918 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 646482141 |
Product | phosphoenolpyruvate carboxykinase (GTP) |
Protein accession | YP_003373289 |
Protein GI | 283782535 |
COG category | [C] Energy production and conversion |
COG ID | [COG2352] Phosphoenolpyruvate carboxylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0134547 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAACAG AAAATCAGCA GGTTACTCCG GCAGACGCAA CTATTGTTAC GTCTGGCTTA GGGCGAAAAG GCCCAGAGGA GCGTGACCTT CCAGCATCAC TTAAGCAAGA CATGGATTTG TGCTTGCATA TTCTTCGCGA TGTTCTTGGC GAATTCGATG AAAAATTATT AGCAGTATTC GACGATGTGC GTTTGAATGC TGTAGAAGCT AGTGCGGCTC ATTTTGCGCA AATGGTAGAC GCAAAAGTAA CTGCAGATGA TGGCTTAAGT AAAGCTGTTA GCAAGCTCAA CGGAATGAAT TTGCACGATA CGCAGCTTTT AGCTCGTGCT TTCGCAACAT ATTTCCACTT GGCAAATTTG TGCGAGGAAA ATTATCGTGT TTCTGTACTT CATCAGCGTG AATGTGAAGT TGAAGATTCA TTGCCTGTTG ATCCAGTTAA CGAACTAACT TGTGCTTATC ACAAGTTGCT CACTGAAATG AGCCCTGCTG AAGCGAAAGA ATTGCTTGCA AAGCTTGAGT TTCATCCTGT ATTTACCGCG CACCCAACCG AAGCTCGTCG TAAAGCCGTT GCAGGTAAGA TTCGCAGAAT TTCGCAATTA CTAAGCGAAC ATCATCGTTT AGGCGGATCT GATAAGCGCG AAAATTATCG ACGTCTCTAT AACGAAATTG ATGCGCTTCT TCGCACTTCT CCGATTGCTT TGAAGAAGCC AACTCCAGTT GAAGAATCTG ACACCATTCT CGACATTTTT GACGCCACTT TGTTTGACAC GATTCCAGTC GTGTATCGTC GATTTGACGA TTGGCTGCTT GGTAAGAAGG CTGGATTAGT TCCTCCGCGT TGCCCTGCAT TCTTCCATCC AGGAAGCTGG ATTGGTTCAG ATCGAGATGG CAATCCTAAT GTGACAGCTA AAGTGAGCCG TCAAGTCGCT CGAAAGTTTA GCGATCACGT GCTTGCAGCT TTGGAGAATC GCACGCGCGA AGTTGGCAAG TGCTTAACTA TGGAAACTCG CACAACTCCT CCAAGCGTGG AGTTGCTTGA GTTATGGAAT CGTCAGCGCG AAATGAGCGA ACAGCTTACA GAAAACGCTT CAGACGTTTC TAATAGTGAG CCACATCGTG CAGTAATGTT GGTAATGGCT GACCGTTTGC ATCGCACTAT TAGCCGCGAT ACGGATTTGA TGTATCATTC TTGCGAAGAT TTCATTGAGG ATTTGCAAAT TGTGCAACGC TCTTTGGCAG AAGGCGGAGA TCCTCGTGCT GCATATGGTC CTTTGCAGGA TTTGATTTGG CAAGCGCAAA CCTTTGGATT CCACATGGTT GAAATGGAAT TCCGTCAGCA TTCTCTCGTG CATTCTCGCG CTTTGGAAGA TATTCGCGAA CATGGATTGC ATGGCGAACG CGGTCCGCTT CAGCCAATGA CTCGTGAAGT ACTCGATACG TTCCGCGCTT TAGGAGCAAT TCAAAAGCGC AACGGTATGC GCGCTGCTCG ACGTTATATT ATTTCCTTCG CAAAATCTGC TCAGCATGTA CGTGACGTAT TTGAGCTAAA TCGTCTTGCT TTCGCTCACC CACAGGATGC GCCAACAATC GACGTCATTC CGCTGTTTGA GCAGTTGGAA GATTTGCAAA ACTCTGTAAA TGTGCTTGAG GAGATTATTA AAATTCCTGA AGTGCAAGCT CGTCTTAAGG CTACTGGCCG CAAGATGGAA GTTATGCTTG GCTACTCGGA TTCTTCCAAG GATGCTGGTC CTACTTCCGC AACGCTTGCT TTGCATTCTG CTCAGGAGCG CATTGCTAAG TGGGCTAAGA AGCACGATAT TGATTTGACA CTGTTCCACG GCCGCGGCGG TGCTGTTGGT CGCGGTGGCG GTCCTGCAAA CCGTGCAGTG CTTGCTCAGC CAGTTGGTTC CGTCAACTGC CGCTTCAAGC TTACTGAGCA GGGCGAGGTT ATTTTCGCAC GATATGGCAA TCCAATTCTT GCTATTCGTC ACGTTGAATC CGTTGCTTCT GCAACTTTGC TTCAGTCTTC GCCAAGTGTT GAGAAAACTA ACACTGATAT GACGAAGAAG TATGCGGATA TGGCTGCAAA ACTTGATGTT GCAGCTCATG AGCGTTTCCT TGATTTGCTG CAAACGGATG ACTTTACTCC ATGGTTCTCT ACGGTTACGC CGCTTAGTGA GATTGGTTTG CTTCCAATCG GTTCTCGCCC AGCTAAGCGC GGTTTGGGTG CGAAGTCGTT GGATGATTTG CGCACAATCC CGTGGGTGTT CTCCTGGGCT CAGGCTCGCA TTAACTTAGC AGCATGGTAC GGATTGGGTA CTGCTTGCGA AAAGTTTGGC GATTTGGAAA CTTTGCGTCG CGCTTACGAA GAGTGGCCGC TGTTTAGTAC TTTTATTGAC AATATTGAGA TGTCTTTGGC TAAAACGGAT GAGCGTATTG CTCGCATGTA CTTAAGCCTT GGAGATCGCG AAGATTTGAG TGATAAAGTA CTTTCAGAAA TGCAGCTTAC TCGCAAGTGG GTTTTGCAAA TTGTTGACGA CAAGTGGCCT TTGCAACATC GTCACGTGCT CGGTCAGGCA ATCCGCGTGC GCTCGCCTTA TGTTGACGCG CTGTCTGTAA TCCAGTCGCT TGCATTGCAC AAGCTTCGCA ACAAGGTAGA CAAAGAAGAG CTTAGCGAAA GCCAACAGGC AGAGTTCATC TACCTTATTC TTTGCACTGT TTCTGGTGTT GCTGCAGGCT TGCAGAATAC TGGATGA
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Protein sequence | MATENQQVTP ADATIVTSGL GRKGPEERDL PASLKQDMDL CLHILRDVLG EFDEKLLAVF DDVRLNAVEA SAAHFAQMVD AKVTADDGLS KAVSKLNGMN LHDTQLLARA FATYFHLANL CEENYRVSVL HQRECEVEDS LPVDPVNELT CAYHKLLTEM SPAEAKELLA KLEFHPVFTA HPTEARRKAV AGKIRRISQL LSEHHRLGGS DKRENYRRLY NEIDALLRTS PIALKKPTPV EESDTILDIF DATLFDTIPV VYRRFDDWLL GKKAGLVPPR CPAFFHPGSW IGSDRDGNPN VTAKVSRQVA RKFSDHVLAA LENRTREVGK CLTMETRTTP PSVELLELWN RQREMSEQLT ENASDVSNSE PHRAVMLVMA DRLHRTISRD TDLMYHSCED FIEDLQIVQR SLAEGGDPRA AYGPLQDLIW QAQTFGFHMV EMEFRQHSLV HSRALEDIRE HGLHGERGPL QPMTREVLDT FRALGAIQKR NGMRAARRYI ISFAKSAQHV RDVFELNRLA FAHPQDAPTI DVIPLFEQLE DLQNSVNVLE EIIKIPEVQA RLKATGRKME VMLGYSDSSK DAGPTSATLA LHSAQERIAK WAKKHDIDLT LFHGRGGAVG RGGGPANRAV LAQPVGSVNC RFKLTEQGEV IFARYGNPIL AIRHVESVAS ATLLQSSPSV EKTNTDMTKK YADMAAKLDV AAHERFLDLL QTDDFTPWFS TVTPLSEIGL LPIGSRPAKR GLGAKSLDDL RTIPWVFSWA QARINLAAWY GLGTACEKFG DLETLRRAYE EWPLFSTFID NIEMSLAKTD ERIARMYLSL GDREDLSDKV LSEMQLTRKW VLQIVDDKWP LQHRHVLGQA IRVRSPYVDA LSVIQSLALH KLRNKVDKEE LSESQQAEFI YLILCTVSGV AAGLQNTG
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