Gene HMPREF0424_0017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0017 
Symbolcah 
ID8709409 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp18196 
End bp18855 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content44% 
IMG OID646482140 
Productcarbonate dehydratase 
Protein accessionYP_003373288 
Protein GI283782534 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0288] Carbonic anhydrase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.00361281 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCACGAGA CAGTCAAAGA AGATCTTTTA AAAGAAGATT CACTTTTGGC TACATCTGTG 
TGGAGCGCGA TGCTAGCTGG TAATCGTAAG TTTGCAGAAG GCTCATTAAA TTGCCATGGA 
CTTAGTGAAG AAACGAGATT ATCTCTTATT GAAGGTCAGC ATCCTGGAGC TGTTGTTCTT 
TCCTGTGCTG ACTCGCGCGT GGCTCCAGAA TTTGTGTTTG GTGCCGGTTT AGGTGATATT 
TTTTCTGTTC GCACTGCAGG CGAAGTGCTT GATGATGCTG TAATTGCATC TTTAGAATAC 
GCTGTAAGCG ATTTGGGAGT AAAAGTGCTT GTTGTTCTTG GACACGAGCA TTGCGGTGCT 
GTACAAGCCG TTTTGCCGAA TGTGCAAAAG CTGGTTTCTA AATACGGCGA AGATGAAGCA 
AACGAAATAA TTGAGTCTAG CGGGTCAATA TTGCTTCGTT CTTTAGGGCC GGCTGCGCTC 
GCAGGTATTG AAGAAGACTT GAGCACGGAC GATATTGAGC GCATTCACGT GTCTAATATG 
TTGGCTGAAA TTTGCGATAA ATCTCAAATT ATTCGTGAAG CCGCCTTTAA CGATAACCTT 
ATGCTAGTTG GCGCTAGGTA TAGAATGAGT GATGGTTTAG TAGAGGTTCT TTCATGCTAA
 
Protein sequence
MHETVKEDLL KEDSLLATSV WSAMLAGNRK FAEGSLNCHG LSEETRLSLI EGQHPGAVVL 
SCADSRVAPE FVFGAGLGDI FSVRTAGEVL DDAVIASLEY AVSDLGVKVL VVLGHEHCGA 
VQAVLPNVQK LVSKYGEDEA NEIIESSGSI LLRSLGPAAL AGIEEDLSTD DIERIHVSNM 
LAEICDKSQI IREAAFNDNL MLVGARYRMS DGLVEVLSC