| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0015 |
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| Symbol | |
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| ID | 8709890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 16279 |
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| End bp | 17049 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482138 |
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| Product | hypothetical protein |
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| Protein accession | YP_003373286 |
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| Protein GI | 283782532 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3689] Predicted membrane protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000410409 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAGC AAAAATGTGT TGAGCATAAT GCTTGTAAAA AAATCACTTT AGCTCAATTG
GTAGAAGCTA TTTTATTGCT ATTTTTTGCA GTCATAATTG CGAAAGTTAC TTTAAGCGGT
AGATATACGC TTTTTACTAC GCCTAGAGCA TATTATTATT TGTTAATTAC TGCTATTTTG
CTATTTATTT TGTCTATATG TGCTGCGATT GGATGGTTTT CTGTTTCTTC GCGCGATGTT
TGGCGTATGT TTGTAGCTTT CGTTGTTCCT GCGCTACTTA TTATTGTTCC TTTGCGTTAC
GCTCAAAATA TTAGTGTAGA TGGATTCGAC CAGTATGCTG GCGGTCGTGC TATTGCTATT
CGTAGCCAAA ATTATCCTTT GCCAGGATTG TATGAAAAAT CTCATGAGAT AACAGTTGAT
GATGATGATT TCGGCTCCTG GTATGACGAA ATCGATCATA ATGCTGCAAA ATATGATGGA
TACGCGATTA CTCTTACAGG TTTTGTCAGC AGAGATTCTA CGTTGAATGC AAATCAATTT
AGGGTATCTC GTCAGCTTAT GTCATGCTGT ATTCTCGACA TGTCTCCGTT TGGATTAGTT
GCCGAAAAAT CAAATATTGG CGAAATTCAA GATCATGAAT GGGTGCGTGT TCGTGCACGC
GTTTCTAGAG GCAATATTGG CATTCCTGGA TATCAGCATC CTGGAGTTGT GCTGCACGTT
ATATCAATGC AAACAGCTCA AGCTCCAACT GGATATTTTT ATCGCCCATA A
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| Protein sequence | MKKQKCVEHN ACKKITLAQL VEAILLLFFA VIIAKVTLSG RYTLFTTPRA YYYLLITAIL
LFILSICAAI GWFSVSSRDV WRMFVAFVVP ALLIIVPLRY AQNISVDGFD QYAGGRAIAI
RSQNYPLPGL YEKSHEITVD DDDFGSWYDE IDHNAAKYDG YAITLTGFVS RDSTLNANQF
RVSRQLMSCC ILDMSPFGLV AEKSNIGEIQ DHEWVRVRAR VSRGNIGIPG YQHPGVVLHV
ISMQTAQAPT GYFYRP
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