| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0007 |
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| Symbol | |
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| ID | 8710052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 8234 |
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| End bp | 9112 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482130 |
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| Product | peptidase, M48 family |
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| Protein accession | YP_003373280 |
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| Protein GI | 283782526 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0501] Zn-dependent protease with chaperone function |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000014459 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTGAAAG GCTTGAGAAT ACACTATGGC AGCTTAAAAG CCGCACTATT TTTTGTTGTT
GTGTGGCTTT TTCTTGCCTT ATGTTGGGTT CTTACTGGCT CGCATCTGTC TTCACTAATA
TGGTTCATTA TTCCTGGTAT TGCATTTAGT GTTTTTGCTT ATTGGTGCTC AAGTAAGCTT
GCGATTATTG CTATGCATGC TACAGAGGTT AGTGAAGAAG AAGAGCCTGT GCTTTACGCA
ATGGTCAGAG ATTTATCTGC TCGAATTGGT AAACCTATGC CGCGAGTAAT GGTTTCTCCC
TACGAAAGTC CTAATGCTTT TGCAACTGGT AGAAGTGAGC GTCATGCGAG TATATGTTGT
ACTCGTGGTT TGATTAATAT TCTTAACGAG CGCGAGTTAC GTAGTGTTAT TGGTCATGAA
TTAACTCATA TTTATAATCA TGATATTCTC GCTTCTTCGC TGGCTACTGC TACAGCAACA
GTATTAACGT ACGTTGGTTC TTGGCTTGTT TATGTCGGTG ATACATATCG TCGTGATATT
CGCAAGTATT GCAAATTTAT TGGTAAGTTT TTGAATATTT TATTCGCTCC TATTGCTTCT
GTTATTATCA ATGCAATTAT TCCTGGTTCG CGTGAATTTG ACGCAGATAA GGGAAGTAGT
GAAATTACTG GAGATTTTGC TGCGCTTGCT TCCGCACTTA ATAAAATTAC TTACGGCATG
CAGCTTCACG AGATGAAATC TACTGCTGGA TTGCAGGCTG TTGCTTCTTT GATGATTATT
TGTCCATGGA ATAATAACGC TCCTGCGCTT GTGCATTTGT GTACTGCGCG TCCTACTGTT
CAGGATAGGA TTGGGCGTTT AATGAGCATT GCTGCATGA
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| Protein sequence | MLKGLRIHYG SLKAALFFVV VWLFLALCWV LTGSHLSSLI WFIIPGIAFS VFAYWCSSKL
AIIAMHATEV SEEEEPVLYA MVRDLSARIG KPMPRVMVSP YESPNAFATG RSERHASICC
TRGLINILNE RELRSVIGHE LTHIYNHDIL ASSLATATAT VLTYVGSWLV YVGDTYRRDI
RKYCKFIGKF LNILFAPIAS VIINAIIPGS REFDADKGSS EITGDFAALA SALNKITYGM
QLHEMKSTAG LQAVASLMII CPWNNNAPAL VHLCTARPTV QDRIGRLMSI AA
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