Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0004 |
Symbol | |
ID | 8708750 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 3676 |
End bp | 4854 |
Gene Length | 1179 bp |
Protein Length | 392 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646482127 |
Product | triacylglycerol lipase |
Protein accession | YP_003373278 |
Protein GI | 283782524 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000000112328 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAAACGCA ATGCAGTAAC AGGGTTTTTA ACTAGCCTAT GCATGCTCTT GAGCCTATCT GCTTTCGCAA TGCCAGCAAT GGCAACAACC GCAGATAATT ATGCAAAAAC TCCACTTACT GCTGAAACAG CTAAACAAAT CGCAAATGGA ACTATAGGCT TAGATTTACC TGGGGCTTTG GATATGTCTT TATATCACAA GAAGCCTCTT GATCCACAAG CTGATTTAGA TGGTGACGGC TTAACTAATA GTCAGGAAAT TTACACTTAC ACTAAAGACG GTAAGACTTA TTATGGGTAC AATTCTCACC CTATGATGAA CGATACCGAT GGCGATGGTA TTCCAGATAA TCAAGACAGC AATCCTCGCA GGTGGGATAT TAGTCCTCGC GATATGGCTT TATTCTCTGA ACTTTCTTAT CGAGATGATA ATTACATAAA TAAGGTACTC GATTACACTA AACCGCTTCA CGACATTTAC AAAAATCGCA GTGAGTACCG CCTTATGCAC AACGAGCTTG CACCATTCTG GAAAGTTAAG GAAACCTACC ACAAAAGGGG AGGATTTGAT GCTGTTTTGT TTGAAAATGT AAGTCCATAC CCATTCTTAG AACAAGGCAC TGTTCAAGTA CTAGCAATTC GTGGAACTTC CCAATTTAAT GATTACGATG ATGATTTTGC AATAGCTGTA GGTCATAACC CAGATCAAGC TAAAGATGTT GAGCAGTTGA TTGAGCGTTA TGGTCGCGAA AATACTGTTA GCAATTTGTA TATTACCGGA CATTCCCTCG GAGGATATCT TGCACAGCGT GCTTTAATTC GTGCTAAAGG CAAAGGCTAC AACTGGATTA AGAAAATTTA CACATTCAAT TCACCACAAA TTTGGGGAAA TATTTTCAAC CGTTGGTTGC GTGCCGTCGC CAATACTGGC GATAAGCTCA CTCGAGAAGG TTACGCTGTT CATTACAAAG TAGACAACGA CAAGGTTATT CGTTCTGTTG GCAATTTTGC TGGAGCTATA AGCGTCAGCA ATTCTGCGCA AGGACATAGC TCTCGAAGCT ATCTTGAGGC CCGTATGAAC AATTTCCCAG GTTTCACCGT AGGTACTAGA GGAGATATTT CTGGCACTGG ACGTTGGATG GAAGAACTTA ACAACTTCTA CGATGTTCGC ACGTTCTAA
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Protein sequence | MKRNAVTGFL TSLCMLLSLS AFAMPAMATT ADNYAKTPLT AETAKQIANG TIGLDLPGAL DMSLYHKKPL DPQADLDGDG LTNSQEIYTY TKDGKTYYGY NSHPMMNDTD GDGIPDNQDS NPRRWDISPR DMALFSELSY RDDNYINKVL DYTKPLHDIY KNRSEYRLMH NELAPFWKVK ETYHKRGGFD AVLFENVSPY PFLEQGTVQV LAIRGTSQFN DYDDDFAIAV GHNPDQAKDV EQLIERYGRE NTVSNLYITG HSLGGYLAQR ALIRAKGKGY NWIKKIYTFN SPQIWGNIFN RWLRAVANTG DKLTREGYAV HYKVDNDKVI RSVGNFAGAI SVSNSAQGHS SRSYLEARMN NFPGFTVGTR GDISGTGRWM EELNNFYDVR TF
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