Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0003 |
Symbol | ahpC |
ID | 8710003 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 2759 |
End bp | 3322 |
Gene Length | 564 bp |
Protein Length | 187 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 646482126 |
Product | peroxiredoxin |
Protein accession | YP_003373277 |
Protein GI | 283782523 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0450] Peroxiredoxin |
TIGRFAM ID | [TIGR03137] peroxiredoxin |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00000147227 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTTTAA TGAACACACA TATTCTTCCA TTCAAAGTAA ATGGTTATAA GAATGGCGAA TTTGTTGAAG TAAGTGATAC TGATGTTCTT GGCAAATGGG CAATTTTCTT CTTCTATCCA GCTGATTTTT CATTCGTATG CCCAACTGAA TTGGAAGATC TTGCAAACCA CTATGAGGAA TTGCAAAAGC TAGGCGTTGA AGTTTACTCA GTCTCTACGG ATACACATTT TGTACACAAA GCATGGCATG ACGATTCTGA AGCAATTGCA AAAGTAAAGT ACACTATGTT GGGTGATCCT TCCGGAGCTC TTTCGCGTAA TTTTGACGCT TGGAATCAAG AATCCGGTTT AGCTCACCGA GCTACATTCC TCGTGAATCC GCAAGGTGTG ATTCAGTTCT TTGAGATGAC CGCAGACGGA ATTGGTCGTA ACGCCGACGA GCTGCTTCGT AAAGTTAAAG CAGCACAGTA TATTGCAGCG CACCCAGGCG AAGTTTGCCC AGCAAAATGG GAGCAGGGCG AAGAAACCTT GGAACCTTCT ATCGATTTAG TCGGCAAAAT CTGA
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Protein sequence | MSLMNTHILP FKVNGYKNGE FVEVSDTDVL GKWAIFFFYP ADFSFVCPTE LEDLANHYEE LQKLGVEVYS VSTDTHFVHK AWHDDSEAIA KVKYTMLGDP SGALSRNFDA WNQESGLAHR ATFLVNPQGV IQFFEMTADG IGRNADELLR KVKAAQYIAA HPGEVCPAKW EQGEETLEPS IDLVGKI
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