Gene HMPREF0424_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0003 
SymbolahpC 
ID8710003 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp2759 
End bp3322 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content43% 
IMG OID646482126 
Productperoxiredoxin 
Protein accessionYP_003373277 
Protein GI283782523 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0450] Peroxiredoxin 
TIGRFAM ID[TIGR03137] peroxiredoxin 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000147227 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTTTAA TGAACACACA TATTCTTCCA TTCAAAGTAA ATGGTTATAA GAATGGCGAA 
TTTGTTGAAG TAAGTGATAC TGATGTTCTT GGCAAATGGG CAATTTTCTT CTTCTATCCA
GCTGATTTTT CATTCGTATG CCCAACTGAA TTGGAAGATC TTGCAAACCA CTATGAGGAA
TTGCAAAAGC TAGGCGTTGA AGTTTACTCA GTCTCTACGG ATACACATTT TGTACACAAA
GCATGGCATG ACGATTCTGA AGCAATTGCA AAAGTAAAGT ACACTATGTT GGGTGATCCT
TCCGGAGCTC TTTCGCGTAA TTTTGACGCT TGGAATCAAG AATCCGGTTT AGCTCACCGA
GCTACATTCC TCGTGAATCC GCAAGGTGTG ATTCAGTTCT TTGAGATGAC CGCAGACGGA
ATTGGTCGTA ACGCCGACGA GCTGCTTCGT AAAGTTAAAG CAGCACAGTA TATTGCAGCG
CACCCAGGCG AAGTTTGCCC AGCAAAATGG GAGCAGGGCG AAGAAACCTT GGAACCTTCT
ATCGATTTAG TCGGCAAAAT CTGA
 
Protein sequence
MSLMNTHILP FKVNGYKNGE FVEVSDTDVL GKWAIFFFYP ADFSFVCPTE LEDLANHYEE 
LQKLGVEVYS VSTDTHFVHK AWHDDSEAIA KVKYTMLGDP SGALSRNFDA WNQESGLAHR
ATFLVNPQGV IQFFEMTADG IGRNADELLR KVKAAQYIAA HPGEVCPAKW EQGEETLEPS
IDLVGKI