Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0002 |
Symbol | ahpF |
ID | 8709300 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 956 |
End bp | 2629 |
Gene Length | 1674 bp |
Protein Length | 557 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646482125 |
Product | alkyl hydroperoxide reductase, F subunit |
Protein accession | YP_003373276 |
Protein GI | 283782522 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3634] Alkyl hydroperoxide reductase, large subunit |
TIGRFAM ID | [TIGR03140] alkyl hydroperoxide reductase, F subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000148365 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCTTTGT TGAATGCATC ATTAACTGCT CAGCTTTCAG AATTACTAAA AAAGATGGTA TCTAAAATAG AAATCATTTC TTACGTTGAT AATTCTGAAA CATCTCAAAA AGTTAAATCC TTACTGGAAG AAGTATCTCA GCAAAGTGAC AAAATCAGTA TTTCTGAAGT AAATAATAAT GAAATTAGCA ATGTAAAGCG TAAACCAAGC TTTGAATTGC GTAGAAAACT AGATAATCCA GTAAATGGAG AATCTACTGT ATCGGTTAGT TTTGCGGGAT TGCCTTTAGG GCACGAATTC AGCTCTTTAG TACTAGCACT TCTACAAGTA AGCGGCTATG CGCCAAAAAT TAGTGATGAG CAACGCGATG CAATACTAAA GCTTGGTTCA CACAATGTGA CAACATACAT GTCGGTAACT TGCCTGAATT GCCCAGAAGT TGTGCAATCG CTTAATACCA TTTCTGTTAT TAACCCTAAA ATTCAGCATA CTGTAGTTGA AGGTAGCGCT TTCCGTGAAG AAGTAGATAA ACTCGGTGTA ATGAGCGTGC CAGCAGTTTT TGAAAATGGC AAACTTGTTT CCTCCGGACG GGCAGGAATT GACGAACTTG TATCTGTGCT TGCATCACAA GAAAAATCTG TTGAGCAAAA TGAGAATGGC AATAATGGTA ATAGCGTTTC TTCGGCAAAT GTTGCGCTCG CAGAAAAAAT GAATTCGCAA AATCCATACG ATATTGTTAT TGCTGGCGGC GGTCCTGCTG CTTCTGCTGC CGCAATTTAC ACTGCTCGTA AGGGTTTGCG TACGGCTATG ATTATGGATC ATCGTGGCGG ACAGGTTGTA GAAACTGAAA GTATTGAAAA TCATATTTCC CAAACGCATA CGACTGGTTC TCAACTAGCA GCAGATTTAA CTAAGCATAT TTCTCAATAC GATATTGACG TATTTACTCC TGATTGGGCA GACTCGCTCG ATTTATCTAA GGAACCATAT GGGTTACATA CTATTCATGC GCGTTCTGGC GGATCTTTGA AAGCGCGTGC AGTGATTATT GCAACTGGCG CGACTTGGCG TACGTTGGGC GTTCCTGGAG AAGATGAGTA TAGGAATAGA GGCGTATCAT TCTGCCCTCA TTGCGACGGC CCACTTTTCA AAGATAAGAA TGTTGTCGTT GTTGGCGGCG GAAATTCTGG TGTTGAAGCT GCTATTGATT TAGCAGGAGT TGCAAAACAT GTGACGGTGG TTGAGTTCAT GGATGTGCTT AAAGCTGATC AAGTATTGCT TAATACTTTG CATAAATTAC CTAACGCTGA AGTTATTACG AGTGCTGCCG TAAGTAGTAT TGAAGGTAAT GGTAGTAAAG TTACTGCAAT ACGTTACATA GATCGCAATA AAGCAGACGA TGATGAAAAC AGAGAACATA TTGTTGAAAC CGATGGGGTT TTTGTGCAAA TTGGTTTAGC TCCGAATACT CGTTGGCTTG TAAATAATAT TTCTCTCAAT AATCGAGGAG AAATTATTAC GAATCGCGCT GGATGCACTG ATACTCCGGG TGTTTTTGCT GCTGGAGATT GTTCAGACGA ACCGTATAAG CAGATTGTTA CAGCGTATGG TTCTGGAGCC AATGCTGCGT TATCTGCATT TGACTATCTT ATCCGCAGCC CGCAAAATAA ATAA
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Protein sequence | MSLLNASLTA QLSELLKKMV SKIEIISYVD NSETSQKVKS LLEEVSQQSD KISISEVNNN EISNVKRKPS FELRRKLDNP VNGESTVSVS FAGLPLGHEF SSLVLALLQV SGYAPKISDE QRDAILKLGS HNVTTYMSVT CLNCPEVVQS LNTISVINPK IQHTVVEGSA FREEVDKLGV MSVPAVFENG KLVSSGRAGI DELVSVLASQ EKSVEQNENG NNGNSVSSAN VALAEKMNSQ NPYDIVIAGG GPAASAAAIY TARKGLRTAM IMDHRGGQVV ETESIENHIS QTHTTGSQLA ADLTKHISQY DIDVFTPDWA DSLDLSKEPY GLHTIHARSG GSLKARAVII ATGATWRTLG VPGEDEYRNR GVSFCPHCDG PLFKDKNVVV VGGGNSGVEA AIDLAGVAKH VTVVEFMDVL KADQVLLNTL HKLPNAEVIT SAAVSSIEGN GSKVTAIRYI DRNKADDDEN REHIVETDGV FVQIGLAPNT RWLVNNISLN NRGEIITNRA GCTDTPGVFA AGDCSDEPYK QIVTAYGSGA NAALSAFDYL IRSPQNK
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