| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sros_5547 |
|---|
| Symbol | |
|---|
| ID | 8668841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Streptosporangium roseum DSM 43021 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013595 |
|---|
| Strand | + |
|---|
| Start bp | 6067101 |
|---|
| End bp | 6068378 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | |
|---|
| Product | ECF subfamily RNA polymerase sigma-70 factor |
|---|
| Protein accession | YP_003341043 |
|---|
| Protein GI | 271966847 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.151151 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.328912 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCTG ACGATCCGGC CGTCGACGAC CTGCTGCGCG AACTCGCGCC GCAGGTCGTC
GGCGTGCTCA CCCGCCGCAC CGGGGACTTC GACACCGCCG AGGACGCGGT CCAGGAGGCG
CTGCTGAACG CCGCGGCCCA GTGGCCGGAG GAGGGTGTGC CGGGCAATCC ACGCGGCTGG
CTCATCCAGG TCGCGTTCCG CCGGATGACC GAGCAGGTGC GCAACGAGCA GGCCCGCCGC
CGCCGGGAGG AGCTGGTGGC CACGCAGGCG CCCCCGGAAC GGCGGACCGC GCCCCCCGCC
GACGACGCCC ACGAGACGGA CCGGGACGAC ACGCTGATCA TGCTGTTCCT GTGCTGTCAT
CCCGCGCTCA CCCCGGCCTC CGCCATCGCT CTCACCCTGC GGTCGGTGGG CGGCCTGACC
ACGGCCGAGA TCGCCAAGGC GTTCCTGGTG CCCGAGGCGA CCATGGCGCA GCGGATCAGC
CGGGCCAAGC AGCGCATCAA GGCATCGGGG GTGCCGTTCC GGATGCCGGC CTCCCGGGAG
CGGGCGCGGC GGCTCGGCTC GGTGCTGCAC GTCCTCTACC TCATCTTCAA CGAGGGCTAC
GCCAGCAGCG CCGGCCCCGA CCTGCACCGC GTGGAGCTGT CCCGCGAGGC GATCCGGCTG
GCCAGGACGG TCCACGCCCT GCTCCCGGAC GACTGCGAGG TGGCGGGGCT TCTCGCGCTG
ATGCTGCTCA CCGACGCCCG GCGCGCCGCG CGGACCGGTC CGCGCGGCGC CCCGATCCCG
CTGGCCGAGC AGGACCGGAG CCGGTGGGAC GGCGACGCCG TCGCCGAAGG GGTCGCGCTC
ATCACCGCCA CCCTCGCCAA GGGCGCGGTC GGCCCCTATC AGCTCCAGGC GGCGATCGCG
GCGCTGCACG ACGAGGCGGC GAGTGCCGAG GAGACCGACT GGCCGCAGAT CCTCGCGCTG
TACGGCCTGC TGGAACGCAT GTCCGACAAC CCCGTGATCT CGCTCAACCG CGCCGTCGCC
GCCGCCATGG TGCACGGCGC CGCGACCGGC CTCGACATGC TGAAGGCACT CGACGCCGAC
GGACGCCTGG CGGGGCACCA CCGCTTCCAC ACCGCGCGGG CCCATCTGCT GGAGATGGAC
GGCGACCTGC AGGCGGCCGT CGACGACTAT CGGGTGGCGG CCGGCCGTAC GATGAGCGTC
CCGGAGCGGG ACTACCTCAC CGCCCGTGCC GCCAGGCTCG CCGCGACGGT GTCCGGATCG
GTCCGCCGGG ACCTGTAA
|
|---|
| Protein sequence | MSADDPAVDD LLRELAPQVV GVLTRRTGDF DTAEDAVQEA LLNAAAQWPE EGVPGNPRGW
LIQVAFRRMT EQVRNEQARR RREELVATQA PPERRTAPPA DDAHETDRDD TLIMLFLCCH
PALTPASAIA LTLRSVGGLT TAEIAKAFLV PEATMAQRIS RAKQRIKASG VPFRMPASRE
RARRLGSVLH VLYLIFNEGY ASSAGPDLHR VELSREAIRL ARTVHALLPD DCEVAGLLAL
MLLTDARRAA RTGPRGAPIP LAEQDRSRWD GDAVAEGVAL ITATLAKGAV GPYQLQAAIA
ALHDEAASAE ETDWPQILAL YGLLERMSDN PVISLNRAVA AAMVHGAATG LDMLKALDAD
GRLAGHHRFH TARAHLLEMD GDLQAAVDDY RVAAGRTMSV PERDYLTARA ARLAATVSGS
VRRDL
|
|---|
| |