| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sros_4398 |
|---|
| Symbol | |
|---|
| ID | 8667692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Streptosporangium roseum DSM 43021 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013595 |
|---|
| Strand | - |
|---|
| Start bp | 4908084 |
|---|
| End bp | 4910126 |
|---|
| Gene Length | 2043 bp |
|---|
| Protein Length | 680 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | |
|---|
| Product | Beta-lactamase class C and other penicillin binding protein-like protein |
|---|
| Protein accession | YP_003340017 |
|---|
| Protein GI | 271965821 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.419571 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00211504 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGGGCCGAC GACTGCTGTC CCTGCTGGTG ATACTCCTGT TCCCGCTCAC CCTGGCGGCG
CCCGTCCAGG CCGCCCCCGA ACCCCCGCCC GGCGTCGTCG TCGGGCAGCA GGACGGTCGC
GGGGCGGGGG CGACGCCGAA GGTTCCCGCC GTCGGCGAGA CCCGGTCGGG CGGGCATCTG
GTGAAAACCA CGACGCCCGC GCCGCAGCGC ACCGAGGGCG GCACGGGCGC CATGGCGCGG
GCGACCCCGA GGGCCGGCAC CGCCGCCGCG TTCAACGAGT CCTACGGGGA CGACCAGTAC
CTCACCGCGC CGACGCAGTG GTGGACCGTC AACGGCTGGA CGATCGAGCA GATCTACGAC
TACGCGCAGA GCCAGGGCGC GCGGGTCAGC GACATCGCCC ACCAGCCCGG CACCCAGCTC
ACCTTCACCG CCACCCTCGT CAAGAACGCG GGCGCCTACT GGGTGCGGTC CTGGGGGCTC
TACTACGGGC TGACCGACCA GGGCGTGGTC GGCCTGGCGA ACTACACCGG CACCCGGCCC
GCCTCGGTCG CCCGCTACTG GACAGCGGAC GGCTGGCGGT TCGCCGTCGC GCTGGTCGAC
AACACCGGTG ACGGCGCCCG GCCCTGGTGG TGGTACTACG GCGACACCTC GTTCGTGCTC
GCGCAGCAGC AGGCCACCGG CGCCCGGCCC GTCAAGCTGC GGCCCTTCGA CGCCGGCGGC
GGCGCCCGCT GGTACGACCT GCTGATGACG GGCTGGAGCT CGCAGCAGTT CTGGTGGTGG
CTGGGCGGCA GCGACGCCCA GATCAACAAC CTGGCGAACC AGAACGGCGC ACGGCTGGTG
GACGCCGCCC GCAACGACGA CGGCACCTTC AACGCGATCA TGTTGCGCAA CACCTCCGGC
CCGGGGCCGG GCTGGTGGTA CGGCCTCGGC CACGACCAGC TCAACCTCAA GACGCTGCGC
AAGGGCGCCC GGCTGATCAG CGCGCAGGGG TACGTCGAGA ACGGTCAGAC GCTCTTCGTC
GGCGTCATGA CCCGGGAGGT GACCGGCGCC GACCAGGCCC GCGCCATGGT GCAGAACACC
ATGCTGCACA CCGCCTGGCT CAACGGCACT TCGGCGATCG CCGAACTGTC GGACGGGACG
CTCGGCACAT TCCAGGCGTA CTACGGCGAC GTCTCCGGCA TGGACGTGCG GGTGCGCGTC
GCGAGCGTCT CGAAGACCTT CGCCGCCGCC GAGCTGCTTC GGCTGGCCGC CGCCGGGAAG
GTCTCGCTGG GCGCGCGCGT CTCGCAGTAC CTGCCCGGCG TGACCGGTGG CGACCAGATC
ACCCTGCGGA ACCTCCTCCA GCACACCAGC GGGCTGTACA ACTTCACCGA CGACCTGCCC
TCCTTCGGGA CGACGATGAC GCAGGGGTTC ACCAACCAGC AGTTGCTGGA CATCGTGAAC
CGGCACGCGC GGCTGTTCAC CCCGGGCTCC CGCTACTCCT ATTCCAACAG CAACTACCTG
GTCATCGGCA TGATCATCGA ACGGGTCAGC GGCCGGACCT ACCCCGACCA GATGAGCCGT
GACCTGATCG GCCCGTTCGG GCTGACCGGC ACCTCCGTCC CCACCGACAC CGCGATCTCG
TCGGTGCGGC TGCGCGGCCA CTGGTGGAAC CCCGCCACCT CCACCCGGGT CGAGACCACC
GGCCAGAACG CCTCGCGCTG GGCGGCGGGC GGCCAGATGG TCTCGACCAT CCCCGAACTC
AACCTCTTCT ACAAGTATCT GCTGGTCGGG TATGTGACCG GGGCGAGCTG GCTCAACGAG
ATGAAGAGCA ACCTCGTCTA CACCGGCGAG GGCTCCAAGT GGGCCGGAAT GGGGATCTTC
CGGACCACCT TGAGCTGCGG TAAGAACGTC TGGTGGCACG ACGGCCGGGT CCCCGGCTAC
CGGACGTGGT CGGTGCACTC GGAGAACGGG CAGCGCAGCC TGAGCTGGGC CTACTCGGAG
GGATCGGCCA ACCCGGTCAA CTTCGACGAC GAGTTCATCG ACAACGTCTT CTGTCTCCTC
TGA
|
|---|
| Protein sequence | MGRRLLSLLV ILLFPLTLAA PVQAAPEPPP GVVVGQQDGR GAGATPKVPA VGETRSGGHL
VKTTTPAPQR TEGGTGAMAR ATPRAGTAAA FNESYGDDQY LTAPTQWWTV NGWTIEQIYD
YAQSQGARVS DIAHQPGTQL TFTATLVKNA GAYWVRSWGL YYGLTDQGVV GLANYTGTRP
ASVARYWTAD GWRFAVALVD NTGDGARPWW WYYGDTSFVL AQQQATGARP VKLRPFDAGG
GARWYDLLMT GWSSQQFWWW LGGSDAQINN LANQNGARLV DAARNDDGTF NAIMLRNTSG
PGPGWWYGLG HDQLNLKTLR KGARLISAQG YVENGQTLFV GVMTREVTGA DQARAMVQNT
MLHTAWLNGT SAIAELSDGT LGTFQAYYGD VSGMDVRVRV ASVSKTFAAA ELLRLAAAGK
VSLGARVSQY LPGVTGGDQI TLRNLLQHTS GLYNFTDDLP SFGTTMTQGF TNQQLLDIVN
RHARLFTPGS RYSYSNSNYL VIGMIIERVS GRTYPDQMSR DLIGPFGLTG TSVPTDTAIS
SVRLRGHWWN PATSTRVETT GQNASRWAAG GQMVSTIPEL NLFYKYLLVG YVTGASWLNE
MKSNLVYTGE GSKWAGMGIF RTTLSCGKNV WWHDGRVPGY RTWSVHSENG QRSLSWAYSE
GSANPVNFDD EFIDNVFCLL
|
|---|
| |