| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sros_3858 |
|---|
| Symbol | |
|---|
| ID | 8667148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Streptosporangium roseum DSM 43021 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013595 |
|---|
| Strand | + |
|---|
| Start bp | 4297378 |
|---|
| End bp | 4300191 |
|---|
| Gene Length | 2814 bp |
|---|
| Protein Length | 937 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | |
|---|
| Product | sarcosine oxidase alpha subunit |
|---|
| Protein accession | YP_003339519 |
|---|
| Protein GI | 271965323 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0454194 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0206575 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCGCC AGCCGTTCCG CAGGGACGGC CACCGGGGCG AGACGCTGCG GTTCCGGTTC
GACGGCCGCG ACTACGAGGG GTGCCGGGGC GACACGCTCG CCGCCGCCCT GCTCGCCAAC
GGGGTGCGCA CGGTCGCGAC GAGCGTCCGG CTGGGCCGTC CCCGGGGCGT CTTCGCCGCG
TGGACCGAGG AGCCCAACGC GCTCGTCCAG ATCGAACACC CCTTCCCCGA ACCGATGCTG
CAGGCCACCA CCGTCGAGCT GTACGACGGG CTGGTGGCCA GGGGCCTGCC GGGGAAGGGG
AGGCTGAGCG GCGGGGCCGA CCCGGCGCGC CATGACGGCG TGTACGCCCA CTGCGACGTC
CTGGTGGTCG GGGCCGGGCC CGCCGGGCTC TCGGCGGCGC TGTCCGCCGC CGGCTCGGGC
GCCCGGGTCG TCCTCGCCGA CGACCGGCCC GTGCCCGGGG GCAGCCTGCC GGACACCGCC
GAGACGGTCG ACGGTGTCCC CGGCGCCGAG TGGGCCGCCG CCGCGCTGGC CGAGCTGGAC
GGCCACCCCG ATGTGCGGGT GCTGGCCCGC ACCGGCGTCC TCGGCTACTA CGACGACAAC
TACCTGGTCG CGGTGGAGCG ACGGGGGGAG CGGGCGTCCT CCCGCGAGCG CGTCTGGCGC
ATCCGCGCCC GCCGCGTCGT GCTGGCGACC GGCGCGCACG AGCGGTCCGT CGCCTTCGCC
GGCAACGACC GGCCGGGCGT CATGCTCGCC TCCGCCGCCC GCGCCTACGT CAACCGGTAC
GGCGTCCTGC CGGGCCGTCG CGCGGTGGTG TTCACCGCCA ACGACAGCGC CTACGCCGCG
GCCCGCGACC TGGCGGCCGC CGGCGTCGAG GTCGCGGCCG TCGTCGACGT ACGGCGGGGC
GGCGGCCGGT CATGGGACGG GAGCGAGGTG CTCGCCGGGC ACCTCGTCAC CGGAGTGGGC
GGGCAGGAGG GCGTCTCCTC GGTGACCGTC TCCGCGGACT CCGGGGGAGG CCCCGCCGGG
GAGCTCTCCG GAGGCTCCGC CGGGGGCCGG GAGTTCGAGG CGGACCTGCT GCTGGTGTCG
GGCGGCTGGA ACCCCGTGGT CCACCTGTTC GGCCAGGCGG GAGGACGGCT CCGCTACGAC
GAGCGGCTCG GCGCCTTCCT GCCCGCCGCC ACCCGCCAGG CGGTGGAGGT CGCGGGCGCC
GCGCGGGGGC TGTCCACCCT GGGCCGCTGT CTCGCCGACG GAGCCGCGGC CGGGGCGCGG
GCGGCGGAGG CGGCCGGGTT CCGCGCCGGG CACCGGCCCG CCGCCCGCGC CGAGGACGCT
CCGGAGGCGC CCGCCGAGCA CGTGTGGCTC GTCCCCGCCG CCGACTACCG CGGCCACTTC
GTCGACCTGC AGCGGGACGT GACCGTCGCC GACGTCATGC GGGCGACCGG GGCCGGGCTC
CGCTCGGTCG AGCACGTCAA GCGCTACACC ACCGCCGGGA CCGCCCACGA CCAGGGCAAG
ACCTCCGGGC TGCTGACCGG CGGGGTCGTC GCCCACCTCC TCGGAGTGGA CGTCGCGGAG
CTCGGCACCA CCACCTTCCG CGCGCCGTAC GTGCCGGTGA GCTTCGCCAC CCTCGCCGGG
CGCGACAGGG GGGCGCTGCA CGATCCCGTC CGGGTCACCC CGCTGCACGG GTGGCACGTG
GCCCGCGGCG CGCTGTTCGA GAACGTCGGC CAGTGGAAGC GGCCCCGGTA CTACCCCCGC
GCGGGCGAGG ACATGCGGAC CGCGGTCCTG CGGGAGTGCG CGGCCGTACG GCAGGGCGCG
GGGGCGATGG ACGTCTCCAC GCTGGGCAAG ATCGATCTCC AGGGGCCGGA CGCCGCCGAG
CTGCTCGACC GGCTCTACAC CACCATGATG GGCACCCTCC CCGTGGGCGC GATCCGCTAC
GGCGTGATGT GCCGGCCGGA CGGGACGGTC TTCGACGACG GAACGGTGGC CCGCCTGGCG
GAGGACCGCT TCCTGGCCAC CACGACCACG GGGAACGCCG CCGCGGTCCT GGACTGGATG
GAGGAGTGGC TGCAGACCGA GTGGCCGTCG CTGAGGGTGT ACTGCACCTC GGTCACCGAG
CAGTGGGCGA CGGTGGCGCT CGCCGGGCCG GGCTCCCGGG CCGTGCTGGC CAGGCTCGCC
CCCGGCCTGG CCGTGGACAG GGAGAGCTTC CCGTTCATGA CGTGGCGGGA CGCCCGGGTG
GCGGGCATCG AGGCGAGGGT GTGCCGGATC AGCTTCTCCG GCGAGCTGGC CTATGAGATC
AACGTCAGTG CCTGGGACGG GCTCGCGCTG TGGGAGGCGG TGCAGGGGAG CGGGGCGGTC
ACGCCGTACG GGACCGAGAC CATGCACGTG CTCCGGGCGG AGAAGGGCTA CCCCATCGTC
GGCCAGGACA CCGACGGCAC GGTCACCCCC GCCGACCTCG GCCTGGACTG GGCGGTCTCC
AGGAAGAAGG CCGACTACGT CGGCAAGCGC TCACACGCCC GCCCCGGCGA CCTCAGGCCC
GACCGCAAGC ACCTGGTCGG CCTGCTGCCG GACGACCCGG ACCGGCTGCT GCCCGAAGGC
GCCCACCTGG TGGCCACCGC CCGGCTGCCC GAGCCGCCGG TCCCCACGCT CGGCCACGTC
ACCTCCGGCT ACCGCAGCGC GGCACTCGGG CGGACCTTCG CCCTCGCCCT CGTCAGCGGC
GGGCGCGAGC GCGTCGGCGA GCGGCTCTAC GTGCCCGTCG GGGCCGATCA GGTCCCCGTC
ACCGTCACCC GCCACGTCCT GTACGACCCC GAGGGAGCGC GCCGTGACGG ATGA
|
|---|
| Protein sequence | MTRQPFRRDG HRGETLRFRF DGRDYEGCRG DTLAAALLAN GVRTVATSVR LGRPRGVFAA
WTEEPNALVQ IEHPFPEPML QATTVELYDG LVARGLPGKG RLSGGADPAR HDGVYAHCDV
LVVGAGPAGL SAALSAAGSG ARVVLADDRP VPGGSLPDTA ETVDGVPGAE WAAAALAELD
GHPDVRVLAR TGVLGYYDDN YLVAVERRGE RASSRERVWR IRARRVVLAT GAHERSVAFA
GNDRPGVMLA SAARAYVNRY GVLPGRRAVV FTANDSAYAA ARDLAAAGVE VAAVVDVRRG
GGRSWDGSEV LAGHLVTGVG GQEGVSSVTV SADSGGGPAG ELSGGSAGGR EFEADLLLVS
GGWNPVVHLF GQAGGRLRYD ERLGAFLPAA TRQAVEVAGA ARGLSTLGRC LADGAAAGAR
AAEAAGFRAG HRPAARAEDA PEAPAEHVWL VPAADYRGHF VDLQRDVTVA DVMRATGAGL
RSVEHVKRYT TAGTAHDQGK TSGLLTGGVV AHLLGVDVAE LGTTTFRAPY VPVSFATLAG
RDRGALHDPV RVTPLHGWHV ARGALFENVG QWKRPRYYPR AGEDMRTAVL RECAAVRQGA
GAMDVSTLGK IDLQGPDAAE LLDRLYTTMM GTLPVGAIRY GVMCRPDGTV FDDGTVARLA
EDRFLATTTT GNAAAVLDWM EEWLQTEWPS LRVYCTSVTE QWATVALAGP GSRAVLARLA
PGLAVDRESF PFMTWRDARV AGIEARVCRI SFSGELAYEI NVSAWDGLAL WEAVQGSGAV
TPYGTETMHV LRAEKGYPIV GQDTDGTVTP ADLGLDWAVS RKKADYVGKR SHARPGDLRP
DRKHLVGLLP DDPDRLLPEG AHLVATARLP EPPVPTLGHV TSGYRSAALG RTFALALVSG
GRERVGERLY VPVGADQVPV TVTRHVLYDP EGARRDG
|
|---|
| |