| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sros_1782 |
|---|
| Symbol | |
|---|
| ID | 8665060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Streptosporangium roseum DSM 43021 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013595 |
|---|
| Strand | + |
|---|
| Start bp | 1898628 |
|---|
| End bp | 1899566 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_003337515 |
|---|
| Protein GI | 271963319 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.659696 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGGC CGACGGGGAA TCGGACGCAG GATCAGCACG TCTCGGATCG AGACCTGCTC
GGGACCTACC TGGCTGAGAT CGGGCGGGTC CCCCTGCTCA CCGCGGAGGA GGAGGTCGAG
CTCGCCAAGC GGATCGAGGC GGGTCTCTTC GCGGAGCAGT TGCTGGACGG TGGGCTGGCG
GAGCCGCGGA TCGCGGACGC CGCCGACGAG GAGCTCGAAC GGCTTGCTGT TTCGGGGCAG
CGGGCCAAGG ATGAATTCAT CCAGGCCAAT CTACGTCTTG TGGTGGCGGT CGCGCGCAAA
TACTCCGGCA GGGGAATGCC GTTGATCGAT CTGGTCCAGG AGGGAAACCT GGGCCTGGTG
CGGGCGGTCG AGAAATTCGA TTACCGGCGC GGCTACAAGT TCTCCACATA TGCCACCTGG
TGGATCCGCC AGTCCGTGGG GCGGGCGATC CACGAGCAGG CCCGGCCGGT CCGGCTGCCC
ACCCACGCCG GTGAGCAGAT GACCCGGCTG ATGCGGGTCC GGCGCGACAT GCTGGCCGAG
TTCGACCAGG AGCCGACGGA CGCGGATCTG GCCGCGGTGC TGGAGCTGCC GATCGAGCGG
GTCCGCGAGC TCCGCCGCTG GGCCTCCGAC CCCGTCTCCC TCCAGCTCGG CGTGGGCGAC
GAGGACGAGA CCGAGCTCGG CGACATGATC GCCGACGAGA CGTGGGCCGA TCCCGAGCAG
CAGGCCATGG ACATCCTGGA GCGCGAGCGC CTGGAGCAGT GGCTGACCGG GCTGGAGGGC
CAGACCCGGG AGATGCTCCG CTGGCGCTAC GGCCTGATGG ACGGCCGCGA GCACACGCTG
ACCGAGGTCG GCGAGCGCTA CGGCATCGGC CGTGACCGCG CCCGCCGCAT CGAGCGGGAC
GCGCTGGCCC GGCTGCGGAA GATGGCCACG GCGGCCTGA
|
|---|
| Protein sequence | MARPTGNRTQ DQHVSDRDLL GTYLAEIGRV PLLTAEEEVE LAKRIEAGLF AEQLLDGGLA
EPRIADAADE ELERLAVSGQ RAKDEFIQAN LRLVVAVARK YSGRGMPLID LVQEGNLGLV
RAVEKFDYRR GYKFSTYATW WIRQSVGRAI HEQARPVRLP THAGEQMTRL MRVRRDMLAE
FDQEPTDADL AAVLELPIER VRELRRWASD PVSLQLGVGD EDETELGDMI ADETWADPEQ
QAMDILERER LEQWLTGLEG QTREMLRWRY GLMDGREHTL TEVGERYGIG RDRARRIERD
ALARLRKMAT AA
|
|---|
| |