| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_74 |
|---|
| Symbol | nrdJ1 |
|---|
| ID | 8657028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | - |
|---|
| Start bp | 66237 |
|---|
| End bp | 67994 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | ribonucleotide reductase, cobalamin-dependent |
|---|
| Protein accession | YP_003329575 |
|---|
| Protein GI | 270307517 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTAG TTAGTATTGT TATGGGGTCT AAGTCTGACG CCGAGGTTAT GAAGCCTACC
GAAGAGATAC TGGAGAAAAT GGGTATTTCA TTTGAAACTC TGGTTATGTC TGCCCATCGC
ACTCCGGAAA AAGTGCAGGA GTTTTGTCTT AATGCGCCCG CACGGGGTAT TGAACTGGTT
ATAGCTGCTG CCGGGGGGGC GGCTCATCTG CCGGGAGTGA TTGCCAGCTG GCTGACACTG
CCAGTTATTG GCGTACCTGT TGCTTCAGGT GAACTTAAAG GAATTGATGC CCTGTACTCT
ATAGTCCAGA TGCCGGCCGG CATACCGGTA GCTACAGTAG CCATCGGCTC TGCCGGTGCT
AAAAATGCGG CATATCTGGC GGCTGAAATA CTGGGTTTAA AATATCAAAA TATCCGTCAG
GCGTATGAAA GCTACCGTCG GGAACTTAAA GGTGAGAACA AATGA
|
|---|
| Protein sequence | MKLSQNARIV LEKRYLKRDG DGNIAESSED MFRRVADTVA AAENAYNPPG KAACMAEEFY
CMMTGFEFLP NSPTLLNAGR ELGLLSSCFV LPVADSVEGI SKTIGEAMVI HQYGGGTGFA
FDAIRPEDDP VKSGHTVAGG PVRLVGVFSE AANYIKQAGV RCGCNSASLP VNHPDILKFI
RAKDEGNHSA NFGINIALTD SFIQKVRLGA DYELVNPRTG RVSGSLSAAE VFYRIARSSW
ETGDPGIMFI DRINKDNPTP RLGEFITTDP CGGQPLLPYE SATLGTINLS GMLLKEGNCC
RVDYPRLGGL ITKAVRFLDD VLEVNRYPTA EVEKAAKATR KIGLGFMGFA EMLIKLGIRY
DSADAVSAAD ELMAFVKEAA CQATEELALE RGAFPAFAGS IYAKRGAKPR RNATCLTFTN
TGTTSIIADT SVGIHPIYSL VMVRNILDGQ RLLDINHAFE ETARERGFFS PALIEKLLTG
ESPCNCPEIP EDYRRLLVTA RDIQPEWCIR VQAAFQKYTD NAISQTVNFP ANASVEDIAD
LFLKAHELGL KGVTAYRDSS RESQVLCTGA DCRDIARKYF EDCCV
|
|---|
| |